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Detailed information on CNT30546688


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41803|EF1A_MAIZE, E-value = 1e-99

BLAST vs NONCODE:
NONMEST004097, E-value = 1e-160

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672466Ipomoea trilobaSetaria viridis72.7987.4389.78313forward
CNT30520930Ipomoea trilobaSetaria italica38.8461.1791.62167forward
CNT30698284Ipomoea trilobaQuercus lobata23.0234.6293.9499forward
CNT30378189Ipomoea trilobaArabidopsis thaliana60.763.288.12261forward
CNT30727591Ipomoea trilobaCorchorus capsularis10015.9390.23430forward
CNT30380125Ipomoea trilobaManihot esculenta10035.8690.7430forward
CNT30195181Ipomoea trilobaPisum sativum99.7790.5187.88429forward
CNT30160107Ipomoea trilobaPistacia vera99.0795.390.61426forward
CNT30637620Ipomoea trilobaCapsicum annuum6013.4493.02258forward
CNT3093993Ipomoea trilobaSolanum tuberosum10082.3890.47430forward
CNT30288144Ipomoea trilobaTriticum aestivum71.1682.787.58306forward
CNT30224124Ipomoea trilobaHordeum vulgare68.3798.9988.78294forward
CNT30386294Ipomoea trilobaTriticum turgidum70.782.6187.5304forward
CNT30562819Ipomoea trilobaActinidia chinensis69.0758.9388.89297forward
CNT30590647Ipomoea trilobaMusa acuminata32.7945.1985.82141forward
CNT3084119Ipomoea trilobaVigna radiata10024.1685.58430forward
CNT30233912Ipomoea trilobaBrassica oleracea51.498.6687.33221forward
CNT30509848Ipomoea trilobaSolanum lycopersicum51.6396.5291.44222forward
CNT30658093Ipomoea trilobaTriticum dicoccoides75.1273.9187.31323forward
CNT30608684Ipomoea trilobaGossypium raimondii87.4489.3188.56376forward
CNT3067093Ipomoea trilobaLeersia perrieri53.7251.6888.74231forward
CNT30646927Ipomoea trilobaRosa chinensis65.1283.3388.57280forward
CNT30625732Ipomoea trilobaDaucus carota32.0964.4988.41138forward
CNT30689637Ipomoea trilobaTriticum urartu10044.0687.67430forward
CNT30721809Ipomoea trilobaTriticum spelta56.0515.9789.21241forward
CNT30338600Ipomoea trilobaEragrostis tef98.1487.9288.39422forward
CNT30480842Ipomoea trilobaArabidopsis halleri56.5149.988.07243forward
CNT30363108Ipomoea trilobaSorghum bicolor73.0239.2585.35314forward
CNT30423787Ipomoea trilobaPapaver somniferum99.7723.0388.11429forward
CNT30570869Ipomoea trilobaVitis vinifera75.3597.390.12324forward
CNT30704438Ipomoea trilobaPrunus avium28.3750.6292.62122forward
CNT30645139Ipomoea trilobaCannabis sativa54.6585.1492.77235forward
CNT3031228Ipomoea trilobaTheobroma cacao26.5145.9792.98114forward
CNT30323623Ipomoea trilobaAsparagus officinalis37.2151.2883.12160forward
CNT30120974Ipomoea trilobaCitrus clementina10070.9690.47430forward
CNT30101083Ipomoea trilobaOryza rufipogon97.9178.8487.65421forward
CNT30116334Ipomoea trilobaOryza nivara91.8664.7588.1395forward
CNT30594390Ipomoea trilobaEragrostis curvula65.5899.388.3282forward
CNT30726403Ipomoea trilobaLupinus angustifolius99.7789.9489.51429forward

Expression of CNT30546688

Peptides detected in this lncRNA

>peptide 1 (47 aa)
LVTAANHLPHTKGESKQSMLTGLSILGNTSLKTTSCGVNNEDSTVSL*

>peptide 2 (68 aa)
LLQQQIICLTPRVKASKACSRVCPSLEIPASKPPVVESIMRTAQSACEVPVIMFLIKSRCPGASMTVQ*

>peptide 3 (42 aa)
MSRGINDSAVVLCGLKFPQGNVNGDTTLPLSFELVKHPGILE*

>peptide 4 (46 aa)
MSMVIPRSLSALSLSSTQAYLNDLLFISAASFSNLSITRLSIPPSL*

Sequence

>CNT30546688
CTTGTTACAGCAGCAAATCATTTGCCTCACACCAAGGGTGAAAGCAAGCAAAGCATGCTCACGGGTCTGTCCATCCTTGGAAATACCAGCCTCAAAACCA
CCAGTTGTGGAGTCAATAATGAGGACAGCACAGTCAGCCTGTGAGGTACCAGTAATCATGTTTTTGATAAAGTCACGATGTCCAGGGGCATCAATGACAG
TGCAGTAGTACTTTGTGGTCTCAAATTTCCACAAGGCAATGTCAATGGTGATACCACGCTCCCTCTCAGCTTTGAGCTTGTCAAGCACCCAGGCATACTT
GAATGACCTCTTGTTCATTTCAGCAGCTTCTTTCTCAAACCTCTCAATAACACGCTTGTCAATTCCTCCAAGCTTGTAGATCAAGTGACCAGTAGTGGTC
GACTTACCAGAGTCGACGTGGCCAATGACC