Detailed information on CNT3088002


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000067, E-value = 3e-88

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30700558Vigna radiataQuercus lobata30.3859.6383.23161forward
CNT30403782Vigna radiataBeta vulgaris4050.7280.19212forward
CNT30628902Vigna radiataVigna unguiculata82.8399.192.26439forward
CNT30400472Vigna radiataTriticum turgidum24.7213.1484.73131forward
CNT30145737Vigna radiataMedicago truncatula84.7272.8982.63449forward
CNT30442780Vigna radiataAegilops tauschii24.7216.5285.5131forward
CNT30256655Vigna radiataAvena sativa50.1959.2479.32266forward
CNT30205386Vigna radiataHelianthus annuus47.3635.181.27251forward
CNT30688491Vigna radiataTriticum urartu50.7562.8580.3269forward
CNT30341749Vigna radiataEragrostis tef49.6259.181.37263forward
CNT30410012Vigna radiataPapaver somniferum40.3856.3281.31214forward
CNT3051546Vigna radiataAmborella trichopoda42.2646.4780.8224forward
CNT3023560Vigna radiataPopulus trichocarpa49.0654.6281.92260forward
CNT3035160Vigna radiataCucumis melo33.7735.5282.68179forward
CNT30584594Vigna radiataEchinochloa crusgalli36.0430.9183.77191forward
CNT30335475Vigna radiataCynara cardunculus45.6618.6380.58242forward

Expression of CNT3088002

Peptides detected in this lncRNA

>peptide 1 (35 aa)
CRLGMWDYMDLMETILDCLENMLTKDCTLLTGDCN*

>peptide 2 (78 aa)
MKVKWDCKQVKWGYRQVKLGCMQVKSGCSWEKSGYNWVMWGCSWVMWGCTQAMMDYSLERMDCTQEMRWEKTPSHQHKV

Sequence

>CNT3088002
TGTAGGTTGGGGATGTGGGACTATATGGACTTGATGGAGACAATCTTGGACTGCTTGGAGAATATGCTAACGAAGGACTGTACTTTGCTGACTGGGGATT
GTAACTAGGGGAAGTAGGACTATACGATGGGGAAGTAGGACTATACGATGGGGATGTTGGGCTATATGAGGGTGACGTAGGGCTGTATCCAGGTGAAGTG
GGGCTGTAAGCAGGGGAAGCAGGGCTATATGATGGGGAGGTAGGGCTGTAAGAGGGTGAAGTGGGGCTGTATGAAGGTGACGTAGGACTGTATGAAGGTG
AAGTGGGACTGTAAGCAGGTGAAGTGGGGCTATAGGCAGGTGAAGTTGGGCTGTATGCAGGTGAAGTCGGGCTGTAGCTGGGAGAAGTCGGGCTATAACT
GGGTGATGTGGGGCTGTAGCTGGGTGATGTGGGGCTGTACCCAGGCGATGATGGACTATAGCCTGGAGAGGATGGACTGTACCCAGGAGATGAGGTGGGA
GAAAACGCCATCCCACCAACATAAGGTGAA