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Detailed information on CNT30508722


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSTUT001430, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523536Solanum lycopersicumSetaria italica62.3856.6480.62320forward
CNT30640872Solanum lycopersicumNymphaea colorata82.2655.7579.38422forward
CNT30536042Solanum lycopersicumEucalyptus grandis38.0135.4583.08195forward
CNT30316118Solanum lycopersicumCorylus avellana68.8149.4481.3353forward
CNT30500730Solanum lycopersicumCoffea canephora10059.3881.09513forward
CNT30269286Solanum lycopersicumChenopodium quinoa89.8670.1780.26461forward
CNT30727660Solanum lycopersicumCorchorus capsularis54.7851.3780.07281forward
CNT30378927Solanum lycopersicumManihot esculenta65.354.1281.79335forward
CNT30524942Solanum lycopersicumPhaseolus vulgaris91.4269.979.32469forward
CNT30628702Solanum lycopersicumVigna unguiculata98.8374.0180.47507forward
CNT30489068Solanum lycopersicumOlea europaea72.1274.981.35370forward
CNT30710529Solanum lycopersicumGlycine max55.3650.3583.45284forward
CNT3087851Solanum lycopersicumVigna radiata87.5249.1281.29449forward
CNT30235097Solanum lycopersicumBrassica oleracea91.4258.5580.81469forward
CNT30442780Solanum lycopersicumAegilops tauschii46.7830.2680.83240forward
CNT30668234Solanum lycopersicumTriticum dicoccoides28.2724.6684.14145forward
CNT30311670Solanum lycopersicumCamelina sativa74.2769.1580.05381forward
CNT30263459Solanum lycopersicumBrassica rapa77.5873.5780.65398forward
CNT30140910Solanum lycopersicumLolium perenne59.4585.4379.34305forward
CNT3017802Solanum lycopersicumZea mays66.6787.9280.7342forward
CNT30216752Solanum lycopersicumKalanchoe fedtschenkoi49.5154.8681.89254forward
CNT30341749Solanum lycopersicumEragrostis tef61.7971.2480.76317forward
CNT30366570Solanum lycopersicumSorghum bicolor43.0836.1182.81221forward
CNT30596739Solanum lycopersicumOryza meridionalis53.6142.3182.91275forward
CNT30642025Solanum lycopersicumCannabis sativa64.7264.7281.33332forward
CNT30109704Solanum lycopersicumOryza longistaminata42.539.2183.49218forward
CNT30577473Solanum lycopersicumOryza barthii53.6150.4682.91275forward
CNT30584594Solanum lycopersicumEchinochloa crusgalli50.141.5982.49257forward
CNT30497905Solanum lycopersicumDigitaria exilis50.128.4682.49257forward
CNT30114394Solanum lycopersicumFicus carica34.529.7585.31177forward

Expression of CNT30508722

Peptides detected in this lncRNA

>peptide 1 (29 aa)
PRDCNLVMLDCRMVMLGYSWEMLGCNQGR*

>peptide 2 (65 aa)
MLDYNWVMWVSMKDWLENMLDLSGCSQGSWGYKWGKWGCNQEMWGYNRGKWDCILERSGCNQGMMG

>peptide 3 (46 aa)
MMEKSDYKRVRWGYMKAMWGCKKVKWGCKMAKWGCKMEKWGCRPEK*

Sequence

>CNT30508722
CCGAGGGATTGTAACTTGGTGATGTTGGACTGTAGGATGGTGATGTTGGGCTATAGCTGGGAGATGTTGGGCTGTAACCAGGGGAGGTAGGACTGTAAGC
AGGAGAAGTCGGACTATATGATGGAGAAGTCGGACTATAAGAGGGTGAGGTGGGGCTATATGAAGGCGATGTGGGGCTGTAAGAAGGTGAAGTGGGGCTG
TAAGATGGCGAAGTGGGGCTGTAAGATGGAGAAGTGGGGCTGTAGGCCGGAGAAGTAGGGCTGTAGCTAGGTGATGTTGGGCTGTAGCTAGGCGAGGTTG
GGCTATAGCTTGGAGATGTTGGACTATAACTGGGTGATGTGGGTGAGTATGAAGGACTGGTTGGAGAATATGCTGGACTTGTCGGGCTGTAGCCAGGGGA
GCTGGGGCTATAAGTGGGGGAAGTGGGGCTGTAACCAGGAGATGTGGGGCTATAACCGGGGGAAGTGGGACTGTATCCTGGAGAGGTCGGGCTGTAACCA
GGGGATGATGGGC