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Detailed information on CNT3076593


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640872Brassica junceaNymphaea colorata82.659.5881.37451forward
CNT30536042Brassica junceaEucalyptus grandis65.264.7379.78356forward
CNT30316118Brassica junceaCorylus avellana86.0865.8381.28470forward
CNT30549101Brassica junceaIpomoea triloba34.9832.3783.25191forward
CNT30516792Brassica junceaJuglans regia83.1551.0182.82454forward
CNT30500604Brassica junceaCoffea canephora79.4970.5782.26434forward
CNT30616458Brassica junceaSesamum indicum99.2773.5481.55542forward
CNT30267763Brassica junceaChenopodium quinoa80.5963.1380.91440forward
CNT3021339Brassica junceaCitrullus lanatus86.0874.1383.62470forward
CNT30379091Brassica junceaManihot esculenta53.1149.1584.48290forward
CNT30403782Brassica junceaBeta vulgaris37.1848.5681.28203forward
CNT30524942Brassica junceaPhaseolus vulgaris93.7776.377.93512forward
CNT30628702Brassica junceaVigna unguiculata84.9867.7479.53464forward
CNT30489068Brassica junceaOlea europaea72.8980.5781.66398forward
CNT30708216Brassica junceaGlycine max93.2291.0679.76509forward
CNT3042435Brassica junceaPrunus dulcis89.9370.9580.86491forward
CNT30307041Brassica junceaTriticum aestivum49.2750.1981.78269forward
CNT30400271Brassica junceaTriticum turgidum54.2159.881.42296forward
CNT30559890Brassica junceaActinidia chinensis85.7168.5280.56468forward
CNT30592011Brassica junceaMusa acuminata37.3650.3783.33204forward
CNT3087851Brassica junceaVigna radiata93.7756.0279.3512forward
CNT30234460Brassica junceaBrassica oleracea10077.6795.05546forward
CNT30508904Brassica junceaSolanum lycopersicum87.7377.5180.58479forward
CNT30554721Brassica junceaOryza glaberrima54.431.7682.15297forward
CNT30442780Brassica junceaAegilops tauschii60.0741.3680.18328forward
CNT30312132Brassica junceaCamelina sativa71.7960.4989.54392forward
CNT30263540Brassica junceaBrassica rapa93.9679.5393.96513forward
CNT30687113Brassica junceaTriticum urartu58.6160.1581.56320forward
CNT30350936Brassica junceaEragrostis tef58.0669.6781.7317forward
CNT30476941Brassica junceaArabidopsis halleri98.7267.2989.05539forward
CNT30596736Brassica junceaOryza meridionalis47.6234.4481.54260forward
CNT30370935Brassica junceaOryza glumipatula49.8228.181.25272forward
CNT30154777Brassica junceaPrunus persica99.2767.7582.1542forward
CNT30408809Brassica junceaPapaver somniferum72.5345.8381.57396forward
CNT30573870Brassica junceaVitis vinifera89.3869.2279.92488forward
CNT30705868Brassica junceaPrunus avium81.1441.7182.17443forward
CNT30642025Brassica junceaCannabis sativa56.4160.0483.77308forward
CNT3051605Brassica junceaAmborella trichopoda84.0769.2378.21459forward
CNT30121049Brassica junceaCitrus clementina76.1938.4580.29416forward
CNT3035176Brassica junceaCucumis melo61.961.4582.54338forward
CNT30330867Brassica junceaDioscorea rotundata46.8935.4181.25256forward
CNT30150463Brassica junceaBrachypodium distachyon59.7137.0979.75326forward
CNT30103220Brassica junceaOryza rufipogon53.8531.6583.67294forward
CNT30577473Brassica junceaOryza barthii30.2230.2884.85165forward
CNT30558075Brassica junceaPanicum hallii53.6637.1481.23293forward
CNT3049544Brassica junceaCucumis sativus85.5358.382.44467forward

Expression of CNT3076593

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MQEKLDCKQVKLDCNSGMLGCSLETLDCSLETLGYS*

Sequence

>CNT3076593
TGGAGATGTAGGGCTGTACCCAGGAGATGTAGGGCTGTATGCAGGTGAAGTAGGACTGTAAGAAGGAGATGTTGGACTGTAGGAGGGTGAAGTAGGGCTG
TAAGAAGGCGATGTCGGACTGTAAGATGGTGAAGTTGGACTGTAAGATGGAGAGGTAGGGCTGTATGCAGGAGAAGTTGGACTGTAAGCAGGTGAAGTTG
GACTGTAACTCGGGGATGTTGGGCTGTAGCTTGGAGACGTTGGACTGTAGCTTGGAGACGTTGGGCTATAGCTAGGAGACGTTGGGCTGTAGCTAGGGGA
GGTGGGAGAATATGAAGGACTTGTTGGAGAATAAGCAGGGCTAGTTGGGCTATAGCCAGGAGAACTAGGACTGTACGTGGGAGAAGTGGGACTATAGCCA
GGAGAAGTCGGACTGTATCCAGGTGAAGTCGGACTGTAACCAGGAGAAGTAGGACTGTAACCAGGAGAAGATGGGCTGTAGCCTGGAGATGAAGAAGGAG
AAAACGCCATTCCACCAACATATGGAGAAAACTGAGCATCTGACAT