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Detailed information on CNT30574226


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000067, E-value = 6e-46

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523577Vitis viniferaSetaria italica61.1249.2780305forward
CNT30315764Vitis viniferaCorylus avellana89.3868.280.72446forward
CNT30377120Vitis viniferaArabidopsis thaliana76.7560.4181.98383forward
CNT30616384Vitis viniferaSesamum indicum77.3557.2781.61386forward
CNT30267763Vitis viniferaChenopodium quinoa69.9450.0782.52349forward
CNT30195835Vitis viniferaPisum sativum50.398.8284.46251forward
CNT30591824Vitis viniferaMusa acuminata64.1381.0181.25320forward
CNT30237809Vitis viniferaBrassica oleracea42.4838.283.02212forward
CNT30554593Vitis viniferaOryza glaberrima25.654086.72128forward
CNT30442780Vitis viniferaAegilops tauschii39.8825.0981.41199forward
CNT30263629Vitis viniferaBrassica rapa88.7877.3179.46443forward
CNT30713436Vitis viniferaMalus domestica golden44.0968.3280.91220forward
CNT30366570Vitis viniferaSorghum bicolor63.7351.9680.5318forward
CNT3023412Vitis viniferaPopulus trichocarpa96.3985.1379.42481forward
CNT30150023Vitis viniferaBrachypodium distachyon42.4828.2781.13212forward
CNT30577348Vitis viniferaOryza barthii25.6549.8186.72128forward

Expression of CNT30574226

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MLDCNQERSGYMPERWGCKQEKWGCMQEKWGCMRVMLGCRQEKLDCNLEK*

>peptide 2 (40 aa)
MWGCSWGMWGCSWVRLGSKMDLWENMQDLLDYIQESWDCM*

>peptide 3 (35 aa)
CNLVMSDCKGLMEIVLDCWENMPVMGCILLRKDYN*

Sequence

>CNT30574226
CTGTAATTTGGTGATGTCGGACTGTAAGGGCTTGATGGAGATAGTCTTGGACTGCTGGGAGAATATGCCAGTGATGGGCTGTATTTTGCTGAGGAAGGAT
TATAACTAGGTGATGTAGGGCTGTAGCTTGGAGAGGTGGGACTGTAGCTAGGAGATGTTGGACTGTAACCAGGAGAGGTCGGGCTATATGCCGGAGAGGT
GGGGCTGTAAGCAGGAGAAGTGGGGCTGTATGCAGGAGAAGTGGGGCTGTATGAGGGTGATGTTGGGCTGTAGACAGGAGAAGTTGGACTGTAACTTGGA
GAAGTAGGACTGTAGCTTGGAGATGTAGGACTGTAACTGGGAGATGTGGGGCTGTAGCTGGGGGATGTGGGGCTGTAGCTGGGTGAGGTTGGGGAGTAAG
ATGGACTTGTGGGAGAATATGCAGGACTTGTTGGACTATATCCAGGAGAGCTGGGACTGTATGTAGGTGAGGTAGGGCTGTAACCAGGTGAAGTGGGGC