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Detailed information on CNT30309894

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30692294	Camelina sativa	Oryza sativa	37.32	19.55	91.03	78	forward
CNT30517219	Camelina sativa	Juglans regia	37.32	4.2	93.59	78	forward
CNT30701463	Camelina sativa	Quercus lobata	37.8	15.31	94.94	79	forward
CNT30500340	Camelina sativa	Coffea canephora	37.8	6.79	91.14	79	forward
CNT30278460	Camelina sativa	Chenopodium quinoa	37.8	12.7	93.67	79	forward
CNT3070099	Camelina sativa	Quercus suber	37.8	14.18	94.94	79	forward
CNT30404042	Camelina sativa	Beta vulgaris	37.8	16.46	94.94	79	forward
CNT30526086	Camelina sativa	Phaseolus vulgaris	37.32	14.61	94.87	78	forward
CNT30631133	Camelina sativa	Vigna unguiculata	37.32	12.19	94.87	78	forward
CNT30199009	Camelina sativa	Pisum sativum	38.28	15.07	96.25	80	forward
CNT30487554	Camelina sativa	Olea europaea	37.8	13.32	93.67	79	forward
CNT30708301	Camelina sativa	Glycine max	37.32	12.04	94.87	78	forward
CNT3046844	Camelina sativa	Prunus dulcis	37.32	15.38	92.31	78	forward
CNT30638745	Camelina sativa	Capsicum annuum	37.8	15.52	93.67	79	forward
CNT30187809	Camelina sativa	Secale cereale	37.32	12.36	92.31	78	forward
CNT30307634	Camelina sativa	Triticum aestivum	37.32	12.21	93.59	78	forward
CNT30223926	Camelina sativa	Hordeum vulgare	37.32	12.66	92.31	78	forward
CNT30399552	Camelina sativa	Triticum turgidum	37.32	12.26	93.59	78	forward
CNT30562614	Camelina sativa	Actinidia chinensis	39.23	13.95	92.68	82	forward
CNT3085655	Camelina sativa	Vigna radiata	37.32	16.28	94.87	78	forward
CNT30172276	Camelina sativa	Trifolium pratense	38.28	16.53	93.75	80	forward
CNT30145007	Camelina sativa	Medicago truncatula	34.45	12.12	95.83	72	forward
CNT30249056	Camelina sativa	Avena sativa	37.32	17.11	92.31	78	forward
CNT3060340	Camelina sativa	Arabidopsis lyrata	37.32	15.85	94.87	78	forward
CNT30598174	Camelina sativa	Fraxinus excelsior	32.54	14.98	95.59	68	forward
CNT30136282	Camelina sativa	Lolium perenne	37.32	14.13	92.31	78	forward
CNT30608736	Camelina sativa	Gossypium raimondii	37.8	13.86	92.41	79	forward
CNT30652772	Camelina sativa	Rosa chinensis	37.32	13.11	92.31	78	forward
CNT30210233	Camelina sativa	Helianthus annuus	34.93	16.4	91.78	73	forward
CNT30127630	Camelina sativa	Corymbia citriodora	37.32	17.45	92.31	78	forward
CNT30715353	Camelina sativa	Malus domestica golden	37.32	6.35	93.59	78	forward
CNT30626608	Camelina sativa	Daucus carota	38.28	9.41	93.75	80	forward
CNT30722856	Camelina sativa	Triticum spelta	37.32	18.44	93.59	78	forward
CNT30348900	Camelina sativa	Eragrostis tef	37.32	16.81	91.03	78	forward
CNT30479698	Camelina sativa	Arabidopsis halleri	41.63	19	96.55	87	forward
CNT30359565	Camelina sativa	Lactuca sativa	33.49	10.39	92.86	70	forward
CNT30153721	Camelina sativa	Prunus persica	37.32	15.82	93.59	78	forward
CNT30423745	Camelina sativa	Papaver somniferum	39.23	17.08	92.68	82	forward
CNT30704139	Camelina sativa	Prunus avium	37.32	15.45	94.87	78	forward
CNT30642554	Camelina sativa	Cannabis sativa	37.8	13.69	94.94	79	forward
CNT3057178	Camelina sativa	Amborella trichopoda	38.76	14.04	91.36	81	reverse complement
CNT3024261	Camelina sativa	Populus trichocarpa	37.32	9.52	92.31	78	forward
CNT30120214	Camelina sativa	Citrus clementina	37.32	15.2	93.59	78	forward
CNT30581427	Camelina sativa	Echinochloa crusgalli	38.28	19.23	92.5	80	forward
CNT30499031	Camelina sativa	Digitaria exilis	37.32	14.58	91.03	78	forward
CNT30593864	Camelina sativa	Eragrostis curvula	37.32	13.98	91.03	78	forward
CNT30556718	Camelina sativa	Panicum hallii	37.8	17.63	91.14	79	forward
CNT30112246	Camelina sativa	Ficus carica	37.32	13.98	92.31	78	forward
CNT30725701	Camelina sativa	Lupinus angustifolius	37.32	4.73	94.87	78	forward

Expression of CNT30309894

Peptides detected in this lncRNA

>peptide 1 (68 aa)
KTLDGSLAKKIISLFVVEKSATNLKLGAETKTLNNNEGQVEEEAYEEVKEEASKDETAIQVDPHPSFPS

>peptide 2 (30 aa)
KNPRWLPCEKNHFSLRCREIGDESETRSRN*

Sequence

>CNT30309894
AAAAACCCTAGATGGCTCCCTTGCGAAAAAAATCATTTCTCTCTTCGTTGTAGAGAAATCGGCGACGAATCTGAAACTAGGAGCAGAAACTAAGACACTC
AACAACAATGAGGGCCAAGTGGAAGAAGAAGCGTATGAGGAGGTTAAAGAGGAAGCGTCGAAAGATGAGACAGCGATCCAAGTAGACCCCCACCCAAGTT
TCCCCTCCC