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Detailed information on CNT30581427


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677986Echinochloa crusgalliSetaria viridis18.2724.2898.6876forward
CNT30549577Echinochloa crusgalliIpomoea triloba18.9922.0793.6779reverse complement
CNT30376000Echinochloa crusgalliArabidopsis thaliana18.7520.8692.3178forward
CNT30243105Echinochloa crusgalliAvena sativa20.6714.896.5186forward
CNT30309894Echinochloa crusgalliCamelina sativa19.2338.2892.580forward
CNT30449388Echinochloa crusgalliSaccharum spontaneum20.9116.9398.8587forward
CNT30136282Echinochloa crusgalliLolium perenne20.6715.5894.1986forward
CNT3013205Echinochloa crusgalliZea mays22.610.3895.7494forward
CNT30605418Echinochloa crusgalliGossypium raimondii19.7128.9890.2482forward
CNT30219096Echinochloa crusgalliKalanchoe fedtschenkoi20.4324.2294.1285forward
CNT30551345Echinochloa crusgalliOryza brachyantha20.191595.2484forward
CNT30115058Echinochloa crusgalliEutrema salsugineum20.1918.9689.2984forward

Expression of CNT30581427

Peptides detected in this lncRNA

>peptide 1 (32 aa)
ELAPPPLLPQPQLSLLQPPGRSRASELLPPPR*

>peptide 2 (32 aa)
MQLGCNLLISSSFISTSRLCNVSETIVISVCL*

>peptide 3 (66 aa)
SSRRRRCYRNRNSLFSSRPVGVAPASSFPRRDEGQVEEEAYEAAQEEAPKDEAEIQVDRFVDVGVC*

Sequence

>CNT30581427
AGAGCTCGCGCCGCCGCCGCTGCTACCGCAACCGCAACTCTCTCTTCTCCAGCCGCCCGGTAGGAGTCGCGCCAGCGAGCTCCTTCCCCCGCCGCGATGA
GGGCCAAGTGGAAGAAGAAGCGTATGAGGCGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAGACAGATTTGTCGACGTGGGTGTCTGC
TAGGAGCATGCAGTTGGGTTGCAATTTACTCATCAGTTCCAGTTTCATTAGTACATCGAGGTTGTGTAATGTATCTGAAACCATTGTGATCAGTGTCTGT
CTTTGATATGTAATGAGACAATGATCATCTTAAATTCGAGTATCATCCTGAAACGTTTTGTGCAGAGAATAACCACCAATTGACATGTTTATTTCTATGT
TGGTTTAATACTCGTT