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Detailed information on CNT30500340


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694844Coffea canephoraOryza sativa6.6221.0492.2177forward
CNT30677986Coffea canephoraSetaria viridis5.8421.7394.1268forward
CNT30376000Coffea canephoraArabidopsis thaliana6.7921.1291.1479forward
CNT30309894Coffea canephoraCamelina sativa6.7937.891.1479forward
CNT30467175Coffea canephoraSaccharum spontaneum5.3326.595.1662forward
CNT30429165Coffea canephoraPapaver somniferum6.8722.5492.580forward
CNT30725207Coffea canephoraLupinus angustifolius7.0422.7895.1282forward

Expression of CNT30500340

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MSTVLQDFLKNLLSCFSNFCVYSSVSGMLCLKTYFP*

>peptide 2 (50 aa)
MVSSYLNLHLFHDLLLAPDVKQLLCVDESLAGETTVLYVYCSARLFKKFT*

Sequence

>CNT30500340
AGGGTTTCAAGCAGCACCTATAAATAAATACTCGTAGTCCGAACTTAAAATAAAAAGAGGGTCCCCGTTCCCTACCCCTTTTCACGGCTATGAAATCAAC
TGGCTCGATCCTCATATCCTATTAGGGTCGGTAATTTTGACTGATCTGGAGAATTGGGCGGAGGCCGCTACGTTTTCTGAGGCAACAACATGAGGGCAAA
GTGGAAGAAGAAGCGCATGAGGAGGCTCAAGAGGAAGCGCCGAAAGATGAGACAAAGATCCAAGTAGAAGCTGGATACCACATGGTTTCTTCATATTTGA
ACCTGCATCTTTTTCATGACCTGCTTTTGGCTCCTGATGTCAAGCAGCTCTTATGTGTGGATGAAAGTTTAGCTGGGGAAACTACCGTCTTATATGTCTA
CTGTTCTGCAAGACTTTTTAAAAAATTTACTTAGTTGTTTTAGTAACTTTTGTGTCTATTCCAGTGTAAGCGGCATGTTGTGTCTAAAAACCTATTTTCC
CTAATTTGAAACTGGAACTAGTGTTTTGACATGGAAGGTATTAGTTTATAAAATATGTATTGGTTGACCATCCAGGCGCAACCAGGGTTTTGCACTTCTA
AGTTTCAAGTGGTGCAATTCTGATAGATTTTGACGCCTGCAGCCCCTCAGCTGATCTCCATTTTCTAATCAACAATTCAGTGTCCTACTTGGTGAATTTG
CACCGCTTGGCACCTTGTCAAGCATGGGTGCGTGTTGGGCGGCAATCTGATTAGATCTCTGTCAGAAAAGAGTACCTCGATTGCCTTTTTGTGCGACGGG
GTAAAGATGCTTTCTTTCTTGGTGCGTGTATGTGGGAAAAAACTGGCTGGGCGGGCATAATCAGGAACTGTTTGCTGCTTACCCCAGTCTAAGTATTGGC
CCACGTACAGCTGGAAGGAGCTGCAGGTTGCATCCGTGTTTCGTCTAACACACAATGCAGTGGTAAACTGACAGCTCTTTCAAAACTGCTGCTGCCAGCT
CCCTTTCTTCTTCGCGAATGATCCCTTCCACTAAAATAGTATAAGTCGTCTCACTAGGCATATAGCCTTTCTCAATCATCATCTCAAAGACTTCCAAGGA
CAAGTCTGTTCTCCGAGATTTGCATAACCCAAGCACAAGGGCGTTGAAGTTATCCGTGTCAGGT