Detailed information on CNT30223926


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694844Hordeum vulgareOryza sativa12.3420.7797.3776forward
CNT30677986Hordeum vulgareSetaria viridis10.8821.4195.5267forward
CNT30376000Hordeum vulgareArabidopsis thaliana12.520.5992.2177forward
CNT30249469Hordeum vulgareAvena sativa28.0836.589.02173forward
CNT30309894Hordeum vulgareCamelina sativa12.536.8492.2177forward
CNT30137004Hordeum vulgareLolium perenne13.1534.6296.381forward
CNT30219096Hordeum vulgareKalanchoe fedtschenkoi12.521.9493.5177forward

Expression of CNT30223926

Peptides detected in this lncRNA

>peptide 1 (67 aa)
PHPYKYEARAAAANNLRRSGSSTHLRRRRRREPESEADTAAAMRAKWKKKRMRRLKRKRRKMRQRSK*

>peptide 2 (42 aa)
PIPISTRREPPPPTIYGDRVRPHTSAAAAAANRRARPTPPPR*

>peptide 3 (40 aa)
MSCCFDIGDANPCNKMIICLSSKLDIRLKKYYRLFLICCPV

Sequence

>CNT30223926
CCCCATCCCTATAAGTACGAGGCGAGAGCCGCCGCCGCCAACAATCTACGGAGATCGGGTTCGTCCACACACCTCCGCCGCCGCCGCCGCCGCGAACCGG
AGAGCGAGGCCGACACCGCCGCCGCGATGAGGGCCAAGTGGAAGAAGAAGAGGATGAGGAGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGCGATCCAA
GTAGGCGCCTTGGAGGATGGAGGCGTAGCATCATCTTACATCCAGGCATCGAAACACCGAGGGATGATGGCATAGGCTTGTGATTCCTGATGTGTTCTGC
CGCTGTGGTTGTGGAAGTCGTTTTACCTTTGTCTTGTCAAATTTAGCTGTTTAATACTTGTCTGTGGAAGAAGAAGAGGATGAGGAGGCTCAAGAGGAAG
CGCCGAAAGATGAGGCAGCGTTCCAAGTAGGCGAACAAAGAGGAGATAACCTTGTATCAATGCACCAGTCTGTTGGGTCGTTTGGTTCCTGATATGTCTT
GTTGTTTTGATATTGGGGATGCCAACCCTTGTAACAAGATGATTATATGCTTATCTTCAAAGCTGGATATTCGGCTTAAGAAATATTATCGGCTATTTTT
GATTTGTTGCCCTGTC