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Detailed information on CNT301007


BLAST search results

BLAST vs Swiss-Prot:
sp|P14641|TBA2_MAIZE, E-value = 5e-62

BLAST vs NONCODE:
NONGMAT000220, E-value = 1e-56

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694759Zea maysOryza sativa58.7962.5881.35311forward
CNT30435344Zea maysAegilops tauschii28.1747.9192.62149forward
CNT30210906Zea maysHelianthus annuus37.0575.182.14196forward
CNT30689747Zea maysTriticum urartu28.1748.5393.96149forward
CNT30360524Zea maysLactuca sativa61.2550.5581.79324forward
CNT3024647Zea maysPopulus trichocarpa60.6861.9781.62321forward
CNT30174517Zea maysVigna angularis25.968.1684.67137forward
CNT30726253Zea maysLupinus angustifolius61.0688.7482.97323forward
CNT3065151Zea maysSelaginella moellendorffii15.6940.2987.9583forward

Expression of CNT301007

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MASLSSSIATSVCSRREWVDSTLLYGSTTEVETWGEGYTVNPSLDFLP*

>peptide 2 (64 aa)
MRSRHSETKLRLLAVVNRQTLQEEGTKARACSSANSVEDEEALETSAVVGKLPDAIKAQVNNLLA

>peptide 3 (79 aa)
LGHKPVEVGVGWALNVKGSAADVVDGLIVQQYSHISVLEEGVGGQYTVVWLNYRSRNLGGRVHSEPKLGFLAVVNRQAL*

Sequence

>CNT301007
CTGGGACACAAGCCTGTTGAGGTTGGTGTAGGTTGGGCGCTCAATGTCAAGGGATCGGCGGCAGATGTCGTAGATGGCCTCATTGTCCAGCAGTATAGCC
ACATCAGTGTGCTCGAGGAGGGAGTGGGTGGACAGTACACTGTTGTATGGCTCAACTACCGAAGTAGAAACTTGGGGGGAAGGGTACACAGTGAACCCAA
GCTTGGATTTCTTGCCGTAGTCAACAGACAGGCGCTCTAGGAGGAGGGAACCAAGGCCAGAGCCCGTTCCTCCACCAACAGCGTTGAAGACGAGGAAGCC
CTGGAGACCAGTGCAGTTGTCGGCAAGCTTCCTGATGCGATCAAGGCACAGTGAAACCAAGCTTAGACTTCTTGCCGTAGTCAACAGACAGACGCTCCAG
GAGGAGGGAACCAAGGCCAGAGCCTGTTCCTCCGCCAACAGCGTTGAAGACGAGGAAGCCCTGGAGACCAGTGCAGTTGTCGGCAAGCTTCCTGATGCGA
TCAAGGCACAGGTCAACAATCTCCTTGCC