Detailed information on CNT30521842


BLAST search results

BLAST vs Swiss-Prot:
sp|P33629|TBA_PRUDU, E-value = 5e-75

BLAST vs NONCODE:
NONGMAT000220, E-value = 3e-74

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694759Setaria italicaOryza sativa32.560.3683300forward
CNT30678066Setaria italicaSetaria viridis88.385.3498.53815forward
CNT30640127Setaria italicaNymphaea colorata34.3439.7285.17317forward
CNT30517711Setaria italicaJuglans regia22.8639.8185.78211forward
CNT3071006Setaria italicaQuercus suber31.9661.0882.03295forward
CNT30712809Setaria italicaGlycine max35.4397.6185.02327forward
CNT30237104Setaria italicaBrassica oleracea21.1360.1987.18195forward
CNT3010240Setaria italicaZea mays42.842.1194.68395forward
CNT3041114Setaria italicaChlamydomonas reinhardtii16.6821.9190.91154forward
CNT30229012Setaria italicaAnanas comosus24.8127.6289.08229forward
CNT30648424Setaria italicaRosa chinensis9.6427.7395.5189forward
CNT30204030Setaria italicaHelianthus annuus22.6450.3685.65209forward
CNT30716286Setaria italicaMalus domestica golden37.2726.3486.34344forward
CNT30340361Setaria italicaEragrostis tef24.1642.6491.93223forward
CNT30597037Setaria italicaOryza meridionalis25.1444.2789.66232forward
CNT30360524Setaria italicaLactuca sativa35.4351.0181.65327forward
CNT30430260Setaria italicaPapaver somniferum22.3235.483.98206forward
CNT30570286Setaria italicaVitis vinifera19.2836.1885.39178forward
CNT3024647Setaria italicaPopulus trichocarpa36.5165.0683.38337forward
CNT30726236Setaria italicaLupinus angustifolius63.9272.7582.2590forward

Expression of CNT30521842

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MASLSSRTATSVCSRREWVDRTLLYGSTTEVETWGDGYTVNPSLDFLP*

>peptide 2 (40 aa)
MRSRHRSTKTARGTCFPAPVSLKKVLKASSPPPTVLSPGIW

>peptide 3 (41 aa)
MRSNLWSMRENTSTTLVELEIMHTARCTLARSPPGTTLGGW*

Sequence

>CNT30521842
CAAAACCTGCCGCAGGATTAAACAAGTTCTTACAACATAAGATGTTGTAAACGACATACGACGACAGATAACAGTTCAAACCGACACACCGAACCGACAC
ACCGACACACAACAAGATAAGATAGGAGCCACTCGGGCAGATCATAGGATAACCGCGGCACACAGGCCTGACACAGCAGCAGGAAGCATCGTCTAGTACT
CGTCACCCTCGTCTCCTTCCTCGCCCTCGTCGAACTCAGCGCCGACCTCCTCGTAGTCCTTCTCGAGCGCAGCCAGGTCCTCACGGGCCTCAGAGAACTC
GCCCTCCTCCATGCCCTCACCCACGTACCAGTGAACGAAGGCACGCTTGGCGTACATGAGGTCAAACTTGTGGTCGATGCGGGAGAACACCTCGACCACG
CTGGTGGAGTTGGAGATCATGCACACGGCACGCTGCACCTTGGCCAGGTCACCGCCAGGCACCACGCTGGGGGGCTGGTAGTTGATGTTGGTGTAGGTGG
GGCGCTCAATGTCAAGGGAGCGGCGGCAGATGTCATAGATGGCCTCATTGTCAAGCAGAACAGCAACATCAGTGTGCTCGAGGAGGGAGTGGGTGGACAG
GACACTGTTGTATGGCTCAACCACTGAGGTGGAGACCTGGGGAGATGGGTACACAGTGAACCCGAGCTTGGACTTCTTGCCATAGTCAACAGACAGACGC
TCAAGGAGGAGAGAACCAAGACCAGAGCCTGTTCCTCCACCAACAGCATTGAAGACAAGGAAGCCCTGGAGACCAGTGCAGTTGTCGGCAAGCTTCCTGA
TGCGGTCAAGGCACAGGTCAACAAAAACAGCACGGGGCACATGCTTCCCAGCACCAGTCTCACTGAAGAAGGTGTTGAAAGCATCATCACCTCCTCCAAC
GGTCTTGTCGCCGGGCATCTGGC