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Detailed information on CNT30451548


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43473|TBA1_HORVU, E-value = 1e-151

BLAST vs NONCODE:
NONGMAT000219, E-value = 9e-39

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694759Saccharum spontaneumOryza sativa9.335.6192.66177forward
CNT30671561Saccharum spontaneumSetaria viridis14.0378.397.38267forward
CNT30377837Saccharum spontaneumArabidopsis thaliana17.684.8182.99335forward
CNT30229091Saccharum spontaneumAnanas comosus14.8278.7782.98282forward
CNT30619808Saccharum spontaneumCajanus cajan9.4130.0882.68179forward
CNT3056297Saccharum spontaneumAmborella trichopoda8.1548.2985.16155forward
CNT30333509Saccharum spontaneumCynara cardunculus16.6657.6483.6317forward

Expression of CNT30451548

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MDAWVWNKVGLELGNIHVDSTIKPQGGGK*

>peptide 2 (29 aa)
MIHKLVLYKTISCWCNYKLSTCFMYSFHF*

>peptide 3 (33 aa)
MRENTSATAVLLLIMHTARWTFARSPPGTTEGG*

>peptide 4 (44 aa)
MKWMRGYGTRLVWNSVTSTLIAPSNLREVVSDDMICEISLFKLV*

>peptide 5 (45 aa)
MANRGLRTIYHRIQNGNTQRQYAMKQSHTEYTQNNPTINHQRTTY*

>peptide 6 (53 aa)
MVATAALTSLGTTSPRYIKQQAMYFPCLGSHLAIMLEGSKTALVISGTESCSW*

>peptide 7 (42 aa)
MDQTQNHRTSLPTVPTTAKMQKTYSHEQAEWPTSHGQEGAAL*

Sequence

>CNT30451548
GGATGATATGAACAATCATGGCAAATAGGGGGCTACGAACAATTTACCACAGAATACAAAATGGAAACACACAGCGGCAGTACGCAATGAAGCAGAGCCA
TACAGAGTATACTCAAAATAACCCAACCATTAACCACCAAAGAACTACTTATTAACCAGCTACTCAATAGTCGTCGCCCTCGTCACCCTCATCATCTGCA
CCCTCTGCGCCGACTTCCTCGTAGTCCTTCTCAAGAGCAGCCAAGTCCTCACGGGCCTCTGAGAACTCACCCTCTTCCATACCCTCACCGACGTACCAGT
GAACGAATGCACGCTTGGCGTACATAAGGTCGAACTTGTGGTCGATGCGCGAGAACACCTCGGCAACGGCGGTGTTGTTGCTGATCATGCACACGGCGCG
CTGGACCTTTGCCAGGTCGCCTCCAGGGACAACAGAGGGTGGCTGATAGTTGATGCCACACTTGAATCCAGTGGGGCACCTGTGAGGCGGCAGCATAATG
GAGTCAGTTAGCATCTCGAATCAAGTGATAAGCTTGTGATATCATAAAATAAGCGCAACTAAAGTTGCGAGAAAGACAGCTTACCAGTCCACAAACTGGA
CAGTTCTCTTGGTCTTGATGGTTGCAACTGCGGCGTTGACATCCTTAGGAACAACATCACCACGGTACATCAAGCAGCAAGCCATGTACTTCCCGTGCCT
TGGGTCACACTTGGCCATCATGCTTGAGGGCTCAAAGACAGCATTGGTGATTTCAGGCACAGAGAGCTGCTCATGGTAGGCCTTCTCAGCAGAGATTACA
GGGGCATATGAGGAAAGCATGAAATGGATGCGTGGGTATGGAACAAGGTTGGTCTGGAACTCGGTAACATCCACGTTGATAGCACCATCAAACCTCAGGG
AGGTGGTAAGTGATGATATGATCTGTGAGATCAGCCTGTTCAAGTTAGTGTAGGTTGGCCTTTCGATGTCAAGAGACCTCCTGCATATGTCATAGATAGC
CTCGTTGTCCAGGAGGACTGCAACATCAGTGTGCTCAAGCAAGGAGTGGGTGAGAGGACACTGTTGTATGGCTCTACAACAGCTGTTGACACCTGCAATC
CAGAGTGGCATTAGATGAAAAGTTAAACAATGGACCAGACCCAAAATCATCGAACATCTCTACCCACTGTCCCCACAACAGCTAAGATGCAGAAAACCTA
CTCACATGAACAAGCTGAATGGCCCACATCACATGGACAGGAGGGAGCAGCATTATAGGATAATGTTGGCACATATGCAACGCATGATTTAAAGACACTC
ATAAAGAAGAACTGCAGCCTGTGACAGTTGTACTAATCATGGCCTAAACCATATACAGGAAGGTCCTCCTCACTAACCAGAAGTCCACAACAGTTGCTTG
TTTTGTCCACACATGATTTAAATAATGCTAGGCTGATCCAATAATCAGTGTCTATCTGTGAAATTTAGAAGGCGAGAACAGTGCCACCAAATTACATGAT
CCATAAATTAGTTCTATATAAAACCATTTCCTGTTGGTGTAATTATAAATTGTCGACCTGCTTCATGTATTCTTTCCATTTCTGAGATACTTAACCCAAC
GTCCTTTTGGAAGGAATAGTTATACGAATACGTTTTTCTTTTGTGACATCCATGAATACTCATACTAGGATGCTAATATAAAGTTCTGGCATAGGTAAGG
TCATACCTGTGGGGAAGGATAAATGGTGAAACCAAGCTTAGACTTCTTGCCATAATCAACTGAAAGGCGCTCCAATAGCAGTGAACCAAGTCCAGAGCCA
GTACCACCACCAACAGCATTGAACACCAAGAATCCCTGCAGCCCGGTGCAGTTGTCTGCAAGCTTGCGCACGCGGTCCAGGCATAGATCGACAATCTCCT
TCC