Detailed information on CNT30229091


BLAST search results

BLAST vs Swiss-Prot:
sp|Q38771|TBA_AVESA, E-value = 3e-50

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694759Ananas comosusOryza sativa44.1331.7982.91158forward
CNT30671949Ananas comosusSetaria viridis62.0148.2683.33222forward
CNT30522212Ananas comosusSetaria italica36.8754.3284.09132forward
CNT30377837Ananas comosusArabidopsis thaliana41.3437.4782.43148forward
CNT30712809Ananas comosusGlycine max38.8341.4979.86139forward
CNT30296175Ananas comosusTriticum aestivum36.8745.2181.82132forward
CNT30391993Ananas comosusTriticum turgidum36.8755.4681.82132forward
CNT30451548Ananas comosusSaccharum spontaneum78.7714.8282.98282forward
CNT30136247Ananas comosusLolium perenne36.8743.1480.3132forward
CNT3041219Ananas comosusChlamydomonas reinhardtii67.0442.1180240forward
CNT30716286Ananas comosusMalus domestica golden20.115.5187.572forward
CNT30683531Ananas comosusTriticum urartu36.874381.82132forward
CNT30721349Ananas comosusTriticum spelta36.874481.82132forward
CNT30361422Ananas comosusSorghum bicolor29.0510.6683.65104forward
CNT30596030Ananas comosusOryza meridionalis36.875582.58132forward
CNT30369756Ananas comosusOryza glumipatula26.54785.2695forward
CNT3056297Ananas comosusAmborella trichopoda37.4341.7485.82134forward
CNT30147962Ananas comosusBrachypodium distachyon31.5633.3382.3113forward
CNT30100745Ananas comosusOryza rufipogon36.8711.4682.58132forward
CNT30174517Ananas comosusVigna angularis35.7563.6881.25128forward
CNT3040082Ananas comosusMarchantia polymorpha22.6319.2983.9581forward

Expression of CNT30229091

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MSGWIGRYCMASAIVGQLPHTIKAQINDLLPHC

>peptide 2 (29 aa)
MNAGIGYKIRLELRDVNVDGSIEPQRGGQ*

Sequence

>CNT30229091
CTCGGCGGAGATAACAGGGGCATATGAGGAGAGCATGAAATGAATGCGGGGATAGGGTACAAGATTCGTCTGGAACTCCGTGACGTCAACGTTGATGGCT
CCATCGAACCTCAGAGAGGTGGTCAATGAGGATATGATCTGAGAGATCAAGCGGTTTAGGTTGGTGTAGGTGGGCCTCTCAATATCAAGGGATCTGCGGC
AGATATCATAGATAGCCTCGTTATCCAATAGGACGGCAACATCTGTGTGCTCGAGCAATGAGTGGGTGGATAGGACGCTATTGTATGGCCAGTGCAATTG
TCGGCCAACTTCCGCACACGATCAAGGCACAAATCAACGATCTCCTTCCCCACTGCAT