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Detailed information on CNT3059767


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694759Arabidopsis lyrataOryza sativa21.1630.1880150forward
CNT30677660Arabidopsis lyrataSetaria viridis25.6740.7286.81182forward
CNT30522342Arabidopsis lyrataSetaria italica25.2530.4486.59179forward
CNT30640127Arabidopsis lyrataNymphaea colorata30.6127.1987.56217forward
CNT30532757Arabidopsis lyrataEucalyptus grandis17.2127.7384.43122forward
CNT30547493Arabidopsis lyrataIpomoea triloba33.5721.2985.71238forward
CNT30517711Arabidopsis lyrataJuglans regia36.1148.385.16256forward
CNT30702815Arabidopsis lyrataQuercus lobata22.7143.7587.58161forward
CNT30371538Arabidopsis lyrataArabidopsis thaliana33.7150.3297.07239forward
CNT30618174Arabidopsis lyrataSesamum indicum16.3626.8582.76116forward
CNT30727923Arabidopsis lyrataCorchorus capsularis33.5720.188.24238forward
CNT3071006Arabidopsis lyrataQuercus suber16.7824.6481.51119forward
CNT30379228Arabidopsis lyrataManihot esculenta33.7127.4187.03239forward
CNT30403515Arabidopsis lyrataBeta vulgaris19.7554.4785.71140forward
CNT30504800Arabidopsis lyrataNicotiana attenuata33.4353.6286.92237forward
CNT30709049Arabidopsis lyrataGlycine max32.4433.1983.91230forward
CNT30177039Arabidopsis lyrataSecale cereale28.2114.7385200forward
CNT30284381Arabidopsis lyrataTriticum aestivum32.5830.2484.85231forward
CNT30224654Arabidopsis lyrataHordeum vulgare31.4514.680.72223forward
CNT30391523Arabidopsis lyrataTriticum turgidum26.0925.184.86185forward
CNT3086234Arabidopsis lyrataVigna radiata28.2137.7484.5200forward
CNT30237104Arabidopsis lyrataBrassica oleracea40.3488.2787.76286forward
CNT30553152Arabidopsis lyrataOryza glaberrima22.8523.4182.72162forward
CNT30144939Arabidopsis lyrataMedicago truncatula30.7544.7687.61218forward
CNT30435344Arabidopsis lyrataAegilops tauschii17.3539.5586.18123forward
CNT30247087Arabidopsis lyrataAvena sativa32.4431.4285.22230forward
CNT30655738Arabidopsis lyrataTriticum dicoccoides32.5834.3284.85231forward
CNT3075316Arabidopsis lyrataBrassica juncea22.7154.2189.44161forward
CNT30265526Arabidopsis lyrataBrassica rapa40.0628.691.9284forward
CNT30611949Arabidopsis lyrataArabis alpina10.8622.2593.5177forward
CNT30445850Arabidopsis lyrataSaccharum spontaneum26.0920.3385.95185forward
CNT30136247Arabidopsis lyrataLolium perenne13.6831.784.5497forward
CNT3016707Arabidopsis lyrataZea mays22.9927.1787.12163forward
CNT30606894Arabidopsis lyrataGossypium raimondii21.0240.8286.58149forward
CNT30229012Arabidopsis lyrataAnanas comosus32.7227.9985.34232forward
CNT30219368Arabidopsis lyrataKalanchoe fedtschenkoi20.0324.3283.1142forward
CNT30655223Arabidopsis lyrataRosa chinensis9.5926.7789.7168forward
CNT30204030Arabidopsis lyrataHelianthus annuus28.4948.6788.61202forward
CNT30716299Arabidopsis lyrataMalus domestica golden17.3520.2684.55123forward
CNT30624589Arabidopsis lyrataDaucus carota14.6720.9788.46104forward
CNT30689745Arabidopsis lyrataTriticum urartu32.5830.3185.28231forward
CNT30721658Arabidopsis lyrataTriticum spelta21.0235.986.58149forward
CNT30361562Arabidopsis lyrataSorghum bicolor26.0918.7184.86185forward
CNT30619808Arabidopsis lyrataCajanus cajan20.0323.8783.1142forward
CNT30597159Arabidopsis lyrataOryza meridionalis22.7122.2483.85161forward
CNT30358630Arabidopsis lyrataLactuca sativa35.6864.5481.82253forward
CNT30481833Arabidopsis lyrataChara braunii18.0543.3981.25128forward
CNT30430260Arabidopsis lyrataPapaver somniferum27.7933.8589.34197forward
CNT30570286Arabidopsis lyrataVitis vinifera24.9635.9888.7177forward
CNT3022486Arabidopsis lyrataPopulus trichocarpa33.2937.8286.44236forward
CNT30331419Arabidopsis lyrataDioscorea rotundata20.1750.8981.82143forward
CNT30147962Arabidopsis lyrataBrachypodium distachyon21.0243.9585.23149forward
CNT30100887Arabidopsis lyrataOryza rufipogon28.4926.2383.17202forward
CNT30575645Arabidopsis lyrataOryza barthii22.7118.9984.47161forward
CNT30582828Arabidopsis lyrataEchinochloa crusgalli30.7525.4183.49218forward
CNT30333509Arabidopsis lyrataCynara cardunculus22.2828.7384.81158forward
CNT30724701Arabidopsis lyrataLupinus angustifolius33.5721.0888.66238forward
CNT3040082Arabidopsis lyrataMarchantia polymorpha18.931.982.84134forward

Expression of CNT3059767

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MLQDPHEPLRIHLLPYPHPHTSERKHVWRT*

Sequence

>CNT3059767
GAACTAGATAATAGAAAACAAATGGCTACCGCCACAAGCAAGAGATAGAAATATGGTTTTTGAAAAACACAACTAGGACTCGTAAGAGTTTCGAGCCCAT
TCACACAAACACGAGATAATAGAAAGCCCACATAAAACCCACAACCTTCTTCTTAGTACTCCTCTCCTTCATCATCCTCATCGTCACCACCTTCAGCACC
AACCTCTTCATAATCCTTCTCCAATGCTGCAAGATCCTCACGAGCCTCTGAGAATTCACCTTCTTCCATACCCTCACCCACATACCAGTGAACGAAAGCA
CGTTTGGCGTACATAAGATCAAACTTGTGATCAATACGGGAGAACACCTCAGCAACACTGGTGGAGTTTGAGATCATACAAACAGCTCTCTGCACTTTAG
CAAGATCACCTCCTGGAACAACAGTTGGTGTAGGTTGGTCTCTCAATGCTTAGGGAGCGTCTGCAGATGTCATAGATAGCTTCATTGTCAAGGAGGATGG
AGACATCAGTGTGTTCCAAGAGTGAGTGAGTGGAGAGGACACTGTTACCTGAGGAGAAGGGTAAACAGTGAAACCCAACTTGGACTTTTTGCCATAGTCA
ACAGAAAGTCTCTCAAGGAGGAGAGATCCAAGACCAGATCCAGTCCCTCCACCAACAGCGTTGAAGACGAGGAATCCTTGGAGACCAGTACAGTTATCAG
CGAGCTTTC