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Detailed information on CNT30496537


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694759Digitaria exilisOryza sativa48.2321.9388.99109forward
CNT30678591Digitaria exilisSetaria viridis52.6554.0988.24119forward
CNT30522084Digitaria exilisSetaria italica46.934.7584.91106forward
CNT30317272Digitaria exilisCorylus avellana51.3329.8281.03116forward
CNT30300679Digitaria exilisTriticum aestivum49.1251.1584.68111forward
CNT30383102Digitaria exilisTriticum turgidum27.8821.588.8963forward
CNT30555317Digitaria exilisOryza glaberrima57.5245.4585.38130forward
CNT30611949Digitaria exilisArabis alpina52.6534.3982.35119forward
CNT30135921Digitaria exilisLolium perenne57.5234.5786.92130forward
CNT302373Digitaria exilisZea mays56.6452.4689.06128forward
CNT3041150Digitaria exilisChlamydomonas reinhardtii26.1112.9488.1459forward
CNT30648424Digitaria exilisRosa chinensis43.3630.5383.6798forward
CNT30129276Digitaria exilisCorymbia citriodora35.419.1486.2580forward
CNT30716286Digitaria exilisMalus domestica golden56.649.883.59128forward
CNT30719750Digitaria exilisTriticum spelta51.3348.7487.93116forward
CNT30361871Digitaria exilisSorghum bicolor65.938.7381.21149forward
CNT30619808Digitaria exilisCajanus cajan35.413.4587.580forward
CNT30579614Digitaria exilisEchinochloa crusgalli55.3131.6588125forward

Expression of CNT30496537

Peptides detected in this lncRNA

>peptide 1 (30 aa)
LSHRSIKLACYTYSQRQKLNYQCSDHGQSC*

Sequence

>CNT30496537
CTCAGTCACAGAAGCATAAAACTCGCTTGTTATACATATTCACAAAGACAAAAGTTGAATTACCAGTGTAGTGACCACGGGCAAAGTTGTTAGCTGCATC
CTCCTTCCCGGAGATAAGCTGCTCTGGGTGGAACAGCTGGCGGTATGAGCCAGTGCGCACCTCATCAATGACAGTGGGCTCAAGGTCGACAAAGATGGCC
CTTGGCACATGCTTGCCCGAACCTGT