Detailed information on CNT30100745


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694759Oryza rufipogonOryza sativa12.1528.1787.14140forward
CNT30317272Oryza rufipogonCorylus avellana8.9426.4886.41103forward
CNT30372848Oryza rufipogonArabidopsis thaliana10.5920.3390.98122forward
CNT30229091Oryza rufipogonAnanas comosus11.4636.8782.58132forward
CNT30648424Oryza rufipogonRosa chinensis8.7731.4693.07101forward
CNT30595858Oryza rufipogonOryza meridionalis87.590.5789.681008forward
CNT30369756Oryza rufipogonOryza glumipatula87.0773.9198.91003forward
CNT3024647Oryza rufipogonPopulus trichocarpa9.9822.288.7115forward
CNT3040082Oryza rufipogonMarchantia polymorpha13.3736.6787.01154forward

Expression of CNT30100745

Peptides detected in this lncRNA

>peptide 1 (97 aa)
LRHKPVEVGVGWALNVKGAAADVIDGLIIKQNSNISVLKEGVGREDTVVWLKINKYSTGNMLPSTSLTEEGVESIITSTNSPVTGHLTISLKGQNTC*

>peptide 2 (65 aa)
MEDTRSFQNYHTCVEYLFHRSGKNRSDGQCHQTLDICICIRWVTCTNMTTRSRIRTRRALEMLSK*

>peptide 3 (63 aa)
MYHSIASRTIAFPCDTNNFETYIAQIYHKNTMFMTASTMISTFNSIPRSDPVFRTIISAKFTK*

>peptide 4 (62 aa)
MASLSSRTATSVCSRREWVERTLLYGSRSTNTARGTCFPAPVSLKKVLKASSPPPTVLSLGI*

Sequence

>CNT30100745
CCTGAGACACAAGCCTGTTGAGGTTGGTGTAGGTTGGGCGCTCAATGTCAAGGGAGCGGCGGCAGATGTCATAGATGGCCTCATTATCAAGCAGAACAGC
AACATCAGTGTGCTCAAGGAGGGAGTGGGTAGAGAGGACACTGTTGTATGGCTCAAGATCAACAAATACAGCACGGGGAACATGCTTCCCAGCACCAGTC
TCACTGAAGAAGGTGTTGAAAGCATCATCACCTCCACCAACAGTCCTGTCACTGGGCATCTGACCATCAGCCTGAAAGGACAAAATACATGTTAGCGCCT
TAGTGGTACATTATTATTTCAGTACAGCAAGATAACACAATTCAAAAGACTGACCCATAATAAATAACTAGTCCTCAATTTAAAATTTGAGTTCCTAAAT
AGACATCTATGAATATGCTGTACATCGGCACTACAGAAAATACGATTCCCAATAATTGAACAATTGTACTTTATTTAGTTGTTACTACAACAATGGAAGA
TACAAGATCGTTTCAAAACTACCATACATGCGTGGAGTATTTGTTCCACAGATCTGGAAAAAACAGATCTGACGGGCAGTGTCACCAAACACTAGACATA
TGTATTTGTATTAGGTGGGTGACGTGTACAAACATGACTACCAGATCTAGAATTAGAACGCGGCGTGCTTTGGAAATGTTAAGTAAATAAAATACATCGG
TAACAAATGAACATATTCATATGACATAGCTGTAAAACATCATGATCTATCATATCAACTAGAGGGGATCTCGGCATGTATCATTCTATTGCATCTAGAA
CCATAGCATTTCCATGTGACACAAACAATTTTGAAACATACATTGCTCAGATCTACCATAAGAACACCATGTTCATGACAGCATCGACCATGATTTCCAC
ATTTAACAGCATCCCGAGGTCAGATCCAGTGTTTAGAACTATCATTTCAGCAAAATTCACAAAATAAATCCTCCAATTCGCCTACATATATCCATTCCAC
GCATCCTAGGACCAGATCCACCATACCAGTATACACGAACACTAAACATTTCATCAGATCCGCTAACTACGACAGAGAAAACGCAGATCCAGACAACCAG
ATCCACCGACAAATAAACACAGCCCCCCACATCCAACAACCGCGAATCCACC