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Detailed information on CNT30296175


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6VAG0|TBA2_GOSHI, E-value = 3e-46

BLAST vs NONCODE:
NONGMAT000220, E-value = 6e-57

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694759Triticum aestivumOryza sativa74.3243.6685.25217forward
CNT30522212Triticum aestivumSetaria italica82.8899.5993.39242forward
CNT3071006Triticum aestivumQuercus suber66.7840.3783.59195forward
CNT30712809Triticum aestivumGlycine max71.9262.6987.14210forward
CNT30391993Triticum aestivumTriticum turgidum81.51100100238forward
CNT30555279Triticum aestivumOryza glaberrima44.8641.9993.13131forward
CNT30445136Triticum aestivumSaccharum spontaneum70.8929.491.3207forward
CNT3010240Triticum aestivumZea mays66.7820.7992.82195forward
CNT30606894Triticum aestivumGossypium raimondii69.8655.8985.29204forward
CNT30229091Triticum aestivumAnanas comosus45.2136.8781.82132forward
CNT30655223Triticum aestivumRosa chinensis59.2568.1183.24173forward
CNT30716286Triticum aestivumMalus domestica golden72.2616.1686.73211forward
CNT30106559Triticum aestivumOryza longistaminata22.9529.9194.0367forward
CNT3024647Triticum aestivumPopulus trichocarpa73.9741.784.26216forward
CNT30147962Triticum aestivumBrachypodium distachyon46.9240.4193.43137forward
CNT30726253Triticum aestivumLupinus angustifolius71.9257.6986.19210forward
CNT3065151Triticum aestivumSelaginella moellendorffii26.3737.3887.0177forward
CNT3040082Triticum aestivumMarchantia polymorpha76.7153.3383.93224forward

Expression of CNT30296175

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MASLSRRTATSVCSRREWVDRTLLYGSTTEVET*

>peptide 2 (54 aa)
MLGAQCQGSGGRCHRWPHCQGGQPHQCAQGESGWTGHCCMARQQRWRPEGMGTL*

Sequence

>CNT30296175
CATATATCAAACTTCAAACAGAAAACATGTACTAAGCAGAAACAGGGCTATACCTGAGAAACGAGCCTGTTGAGGTTGGTGTATGTTGGGCGCTCAATGT
CAAGGGAGCGGCGGCAGATGTCATAGATGGCCTCATTGTCAAGGAGGACAGCCACATCAGTGTGCTCAAGGAGAGAGTGGGTGGACAGGACACTGTTGTA
TGGCTCGACAACAGAGGTGGAGACCTGAGGGGATGGGTACACTGTGAACCCAAGCTTGGACTTCTTTCCATAGTCAACAATCTCCTTGCCAA