Detailed information on CNT30225935


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673491Hordeum vulgareSetaria viridis44.0626.7791.19193forward
CNT30712535Hordeum vulgareGlycine max20.0921.284.0988forward
CNT30189384Hordeum vulgareSecale cereale68.2638.0493.98299forward
CNT30301451Hordeum vulgareTriticum aestivum29.4536.0397.67129forward
CNT3017865Hordeum vulgareZea mays42.2483.3388.65185forward
CNT30349160Hordeum vulgareEragrostis tef44.0620.8290.67193forward
CNT30101810Hordeum vulgareOryza rufipogon44.067.6192.75193forward
CNT30594307Hordeum vulgareEragrostis curvula18.0422.5192.4179forward
CNT30551132Hordeum vulgareOryza brachyantha44.065092.75193forward

Expression of CNT30225935

Peptides detected in this lncRNA

>peptide 1 (28 aa)
MMIMPGLKSKFSLTISRISLSGILPVPYV

Sequence

>CNT30225935
TTCCAATACAGATGATTACCAAAGAGTGGAGAGCTATATTTCTTGGATAGTTTCAATCTTGTCGTCACCATTACCATGACTTGAGCAGATAAGAACACAA
GTAGCACACCCACGATACATGCACCTCTAAACACACTGAAAAAAAAAGACTTGCACCGTTGCAGCACTGGAGCAATGAATAGAGATATTACTTGCTGCGA
CAGGTAAAACTAATTTTATTCAGAGGCTTCGCTAAGTGTTTGCTCAGGCAGAAGGCTTCTCCCACTTGAGGGGCTTCACAACCTCCCAGGTGAAGTCCGC
GCCATCCCTGCCGAAGTGCCCGTATGCCGCCGTCTTGAGGTCAAGGTTGATGATGATCATGCCTGGCCTGAAGTCGAAGTTCTCCTTAACAATCTCGAGG
ATCTCCTTGTCAGGGATCTTGCCCGTGCCGTATGTGTC