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Detailed information on CNT3025721


BLAST search results

BLAST vs Swiss-Prot:
sp|A9P822|METK1_POPTR, E-value = 9e-97

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3014405Populus trichocarpaZea mays22.1530.9385.03167forward
CNT30551132Populus trichocarpaOryza brachyantha10.8821.2490.2482forward

Expression of CNT3025721

Peptides detected in this lncRNA

>peptide 1 (40 aa)
LPRASLTGICYFHCRKFNQNYHTFSHHRHWGKKRRKKKPK*

>peptide 2 (33 aa)
MGSPATVGVNNDLASSETCITMRATNNKTARWV*

>peptide 3 (83 aa)
MSVCGCLQEPIATPLEIQVDGHHSRPKVKVLLHNLKDLLVRNFSSAIGDLHNAPTSKTICYDALGSLPNNVSTTSIHLSWVLP*

Sequence

>CNT3025721
GCTACCTCGTGCAAGCTTAACAGGCATTTGTTACTTCCATTGCCGTAAATTCAACCAAAATTATCACACTTTTTCACACCACCGACACTGGGGAAAAAAA
AGACGGAAAAAAAAACCCAAATAGTAAAAGAAAGGAAAATGAATAGGGAGGGTATCGTAGTGTAGACCATGGCAGATTGCTATTGATTATAGACCAGCAG
CAAGAAAACAAGTCAAATTATTCATCAAGGACCAATAAAACAGGCATCGAACTAAAGGGATATTATAAATCACTCAAGCTTGGGGCTTCTCCCATTTGAG
GGGCTTGACAACCTCCCAGGTGAAGTCTGGGTCATCCCTTCCAAAATGTCCGTATGCGGCTGTCTTCAAGAACCTATTGCCACCCCTCTTGAGATCCAGG
TTGATGGTCATCATTCCAGGCCTAAAGTCAAAGTTCTCCTTCACAATCTTAAGGATCTCCTTGTCAGGAATTTTTCCAGTGCCATAGGAGACTTGCACAA
TGCACCTACGAGCAAGACCATTTGCTACGATGCTCTTGGCAGCCTGCCTAACAATGTAAGCACCACTTCTATCCACCTTAGTTGGGTCCTTCCCTGAGAA
AGCACCACCACCATGGGCTCCCCAGCCACCGTAGGTGTCAATAATGATCTTGCGTCCAGTGAGACCTGCATCACCATGAGGGCCACCAATAACAAAACGG
CCAGATGGGTTTAGGTGGAAGATAGTTTTCTCATCAAGGTACTTCTCAGGGATG