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Detailed information on CNT30101810


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0DKY4|METK1_ORYSJ, E-value = 7e-107

BLAST vs NONCODE:
NONORUT006297, E-value = 5e-38

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673492Oryza rufipogonSetaria viridis17.2844.9792.01438forward
CNT30549907Oryza rufipogonIpomoea triloba9.5545.0782.23242forward
CNT30515028Oryza rufipogonJuglans regia11.4434.1679.66290forward
CNT30374815Oryza rufipogonArabidopsis thaliana6.6340.6882.14168forward
CNT30266655Oryza rufipogonChenopodium quinoa17.3639.1585.23440forward
CNT30628634Oryza rufipogonVigna unguiculata7.6526.9486.08194forward
CNT30194995Oryza rufipogonPisum sativum9.926.3782.07251forward
CNT30495282Oryza rufipogonOlea europaea15.8222.7781.8401forward
CNT30712013Oryza rufipogonGlycine max14.8784.3482.49377forward
CNT3047443Oryza rufipogonPrunus dulcis10.321.8885.06261forward
CNT30158121Oryza rufipogonPistacia vera11.647.0484.69294forward
CNT30638840Oryza rufipogonCapsicum annuum8.625.5383.49218forward
CNT3090332Oryza rufipogonSolanum tuberosum12.548.7784.23317forward
CNT30181754Oryza rufipogonSecale cereale9.2337.287.18234forward
CNT30225935Oryza rufipogonHordeum vulgare7.6144.0692.75193forward
CNT30561874Oryza rufipogonActinidia chinensis11.3232.5482.93287forward
CNT3086110Oryza rufipogonVigna radiata12.4328.1882.22315forward
CNT30508429Oryza rufipogonSolanum lycopersicum4.9751.0186.51126forward
CNT30174161Oryza rufipogonTrifolium pratense14.6447.0279.78371forward
CNT30144438Oryza rufipogonMedicago truncatula10.2653.1781.92260forward
CNT30662024Oryza rufipogonTriticum dicoccoides7.9739.7687.62202forward
CNT3059692Oryza rufipogonArabidopsis lyrata2.824.5788.7371forward
CNT3082721Oryza rufipogonBrassica juncea6.8660.2186.78174forward
CNT30471855Oryza rufipogonSaccharum spontaneum19.3353.2691.43490forward
CNT3017355Oryza rufipogonZea mays12.7458.385.45323forward
CNT3067553Oryza rufipogonLeersia perrieri12.975.1788.38327forward
CNT30212612Oryza rufipogonHelianthus annuus6.1965.1582.8157forward
CNT30624603Oryza rufipogonDaucus carota11.8345.4583.67300forward
CNT30349160Oryza rufipogonEragrostis tef11.1630.5390.46283forward
CNT30368076Oryza rufipogonSorghum bicolor15.9437.192.57404forward
CNT30597069Oryza rufipogonOryza meridionalis36.3746.0895.99922forward
CNT30355133Oryza rufipogonLactuca sativa7.6522.1779.9194forward
CNT30429132Oryza rufipogonPapaver somniferum16.4126.2381.97416forward
CNT30571189Oryza rufipogonVitis vinifera11.3246.5983.62287forward
CNT30109152Oryza rufipogonOryza longistaminata37.1697.8288942reverse complement
CNT3022500Oryza rufipogonPopulus trichocarpa12.1946.1284.14309forward
CNT3035650Oryza rufipogonCucumis melo16.1730.4285.61410forward
CNT30148817Oryza rufipogonBrachypodium distachyon17.1237.5486.18434forward
CNT30574675Oryza rufipogonOryza barthii6.8238.3684.97173forward
CNT30116854Oryza rufipogonOryza nivara63.6765.6499.441614forward
CNT30594307Oryza rufipogonEragrostis curvula3.3123.9396.4384forward
CNT30174424Oryza rufipogonVigna angularis18.0756.3381.88458forward
CNT30551132Oryza rufipogonOryza brachyantha14.7196.6394.64373forward
CNT30113343Oryza rufipogonFicus carica5.9642.6688.74151forward

Expression of CNT30101810

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MYCNYHINIPLLGVNISWRPGKKERNRWLAFRGSTILFTCNLSTKTNIINH*

>peptide 2 (60 aa)
MKGEAGQQQQQQQQQHTRNNATSNEDRGIGGSPAAAVAAAEEEEPGRSDRGEEEEVEEVN*

>peptide 3 (61 aa)
MCPWSPAPISSGRLVKWPCTPCAMSGDCCSMFTSTLQWSASRPTSADTKPMLRHVSLTIFS*

>peptide 4 (67 aa)
MTMFVLVQVSQATLLSGSSARQASSTASETWSQSLSGWPSFTDSEVKRKVSSAAIFSYLHKMVFHIL*

>peptide 5 (32 aa)
MAAGGRLRITMLSSEETKHHNGTEQKLPKGSF*

>peptide 6 (36 aa)
MLFISKPFDKHQGIKHLKGSHPTVSLSISIHNNKQA*

>peptide 7 (48 aa)
MVYATKFVLSKQVKKTVARNKTFLLILYIAYVRQDAVLLAPDKTTILG*

>peptide 8 (99 aa)
MIRPQDNQPRAQIQPESLILPRTLKPSSPFSSRKNEGRSRTAAAAAAAATHTQQRYQQRGQGNRRLTCGGGGGGGGGGAGPIRSGGGGGGGGGKLIRSDR

>peptide 9 (83 aa)
MMIMPGLKSKFSFTILRISLSGILPVPYVSTNTDSGSGTPMAYDTWTMQRRARPLATMLLAACLATYAPLRSTLVGSHSCEPP*

>peptide 10 (89 aa)
MLHCGQPWLGPILANLRKTSAKLGSKDMAEGHQLRGLISCISKHVSLVTSTNLLRALGEVAVHTLCNVRGLLLDVHKHLAVVSIETDIS*

Sequence

>CNT30101810
ACATAGGAGGTTTCATTTCTTCTTCTCAAAGTAGTGTAGCATCTTTCCTTCTTTCACCATTACATAAGCTTAAGCAATAACAGATAACAAATCATCCTCC
TCCTCCTCTAGGTAAAATATTCAAACACAATACCCTTATAAGTACTTATTATTAGGAAAGTAGCGTGCATGGGCATAAATGGCAGCGGGGGGCAGGTTAA
GAATCACAATGCTGAGCAGCGAGGAAACAAAACACCATAATGGGACAGAGCAAAAGCTTCCGAAAGGGAGCTTTTAGGCAGAAGGCTTCTCCCACTTGAG
GGGCTTCACCACCTCCCAGGTGAAGTCTGGGTCGTCCCTTCCAAAGTGACCGTAAGCCGCCGTCTTGAGGTCAAGGTTGATGATGATCATGCCAGGCCTG
AAGTCGAAGTTCTCCTTCACAATCTTGAGGATCTCCTTGTCAGGGATCCTGCCAGTGCCGTATGTGTCGACGAATACGGACAGTGGCTCTGGGACACCGA
TGGCGTATGATACTTGGACAATGCAGCGGCGAGCAAGGCCACTAGCAACAATGCTCTTGGCAGCTTGCCTTGCGACGTATGCTCCACTGCGGTCAACCTT
GGTTGGGTCCCATTCTTGCGAACCTCCGTAAGACGAGCGCCAAGCTTGGTAGCAAGGACATGGCTGAGGGGCATCAACTCAGGGGTCTCATCAGTTGCAT
ATCCAAACATGTGTCCCTGGTCACCAGCACCAATCTCCTCAGGGCGCTTGGTGAAGTGGCCGTGCACACCCTGTGCAATGTCAGGGGACTGCTGCTCGAT
GTTCACAAGCACCTTGCAGTGGTCAGCATCGAGACCGACATCAGCTGACACAAAACCGATGTTACGGCATGTCTCCCTGACAATCTTCTCATAGTCGACG
TTAGCCTTGGTGGTGATCTCACCAAAGACCATGACCATGTTTGTCTTGGTGCAGGTCTCACAAGCGACCTTGCTGTCAGGGTCCTCGGCGAGGCAGGCAT
CAAGCACAGCATCTGAGACTTGGTCGCAGAGCTTGTCAGGGTGGCCCTCGTTCACAGACTCCGAGGTAAAGAGGAAGGTATCAAGTGCGGCCATCTTCTC
CTATCTGCATAAAATGGTATTTCACATACTTTAGACAAAGAAATATCATGAATAAAATGGACATGGTGAGCCTATGAGAAAAAAAGGGGTATAAGTGATA
GCTAATGTGAAGGGAAGCTGATAGCGACAATTGATTTCTGGAAATGCTTACATAACACACTGAGAGGACAATACTGATCCCTAGAACAAATGGTTTATGC
AACAAAATTTGTCCTGAGTAAACAGGTTAAAAAAACAGTAGCAAGGAACAAAACATTCCTTTTAATCCTCTATATAGCTTATGTACGCCAAGATGCTGTT
TTGTTGGCACCTGACAAGACCACAATTTTGGGCTAAAATAGTTGTCCCTACAAAGAGTTGACTAAGTTCCTAAGTTCCTTGGGCAAGTGTTAGGTATTTG
TAATATTCTCTACAAGCGCAACAAGCAGGTATAGAGCACAAGGAATCTAACAATTTTCTGCCGGAATCAGCATAAACGCATAATCAATCGTGGTGCCACT
ATGTATTGTAACTATCACATAAATATACCACTTTTAGGGGTAAACATATCCTGGAGACCTGGAAAAAAAGAGCGAAATCGCTGGCTAGCTTTTAGGGGTT
CTACTATACTCTTTACATGTAATCTTTCCACAAAGACAAACATCATAAATCATTGAACATGCGCATCAACTAATCAAGCACATAAAACAACAGCAGAAAC
ATATCAATTCGTCTTGGCATATTTAACTTTGAAGTGGCACCAATCAATTATTTTTTCCATTTTCCGTTCATTTATAAGAATTCCAACTCCCAAGACCAAG
GGGATGACTCGAATCTACCGCAGAACAGTCAAATGAGCTGACAGCCAAAGACATAATACTAGCACTAAAACCACTGCTCTAGCATGTTGTTTATCAGCAA
GCCGTTTGATAAGCATCAAGGTATTAAACATCTAAAAGGAAGTCATCCTACTGTTTCTCTCTCCATCTCCATCCATAATAATAAGCAAGCATGACAAAAA
TAAAACTTACAACACCTAAATCCAACCAAAGAAACCCCATCTAAATCTACCATACCACAAGATCGAAAGAAAAGCAATAAACCCTCCTTATAACCCTCCC
AAACCAGCACAAACAAATCAATATCTAGGCACGATGATACGTCCGCAAGACAACCAACCACGAGCTCAGATCCAACCTGAGAGCTTGATCCTACCAAGAA
CGCTAAAACCCTCCTCTCCCTTTTCAAGCCGCAAGAATGAAGGGAGAAGCCGGACAGCAGCAGCAGCAGCAGCAGCAGCAACACACACGCAACAACGCTA
CCAGCAACGAGGACAGGGGAATCGGCGGCTCACCTGCGGCGGCGGTGGCGGCGGCGGAGGAGGAGGAGCCGGGCCGATCCGATCGGGGGGAGGAGGAGGA
GGTGGAGGAGGTAAATTAATTAGATCCGACCGGGC