CANTATAdb - search

Detailed information on CNT30349160

BLAST search results

BLAST vs Swiss-Prot:
sp|P31155|METK1_PETCR, E-value = 2e-85

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30672530	Eragrostis tef	Setaria viridis	30.85	46.2	91.26	286	forward
CNT30158121	Eragrostis tef	Pistacia vera	32.58	48.32	85.43	302	forward
CNT30225935	Eragrostis tef	Hordeum vulgare	20.82	44.06	90.67	193	forward
CNT3017355	Eragrostis tef	Zea mays	28.05	46.93	86.15	260	forward
CNT30218287	Eragrostis tef	Kalanchoe fedtschenkoi	14.24	25.43	86.36	132	forward
CNT30368062	Eragrostis tef	Sorghum bicolor	31.28	26.39	91.72	290	forward
CNT30355133	Eragrostis tef	Lactuca sativa	18.99	20.11	85.23	176	forward
CNT30571189	Eragrostis tef	Vitis vinifera	31.93	48.05	87.16	296	forward
CNT30101810	Eragrostis tef	Oryza rufipogon	30.53	11.16	90.46	283	forward
CNT30574675	Eragrostis tef	Oryza barthii	16.07	33.04	84.56	149	forward
CNT30594307	Eragrostis tef	Eragrostis curvula	12.94	34.19	97.5	120	forward
CNT30551132	Eragrostis tef	Oryza brachyantha	21.04	50.52	93.85	195	forward

Expression of CNT30349160

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MMIMPGLKSKFSFTILRISLSGILPVPYVSTNTESGSGTPMA*

>peptide 2 (38 aa)
MARRARPFATMLHCGRPWSGPFQRKHHHRELPNHHRCQ*

>peptide 3 (44 aa)
RNFSQNTRSDQIIYEQHCHLKITKEHQALFLLNCRSFFHSFTIT*

>peptide 4 (66 aa)
MRSTNDKATGWVQMEDGLLVKVLLRDDSLVMLGRDEDSVDTNWDHSTTLIAVLNSHLGLSIRPEPGA

>peptide 5 (61 aa)
MTKRPDGFRWKMVFSSRYCSGMTVSSCWVEMRTVWTRTGTIAPPSLRYSTVTWVFPSGLSQG

Sequence

>CNT30349160
CCAGAAATTTCTCACAAAACACACGCTCAGATCAAATAATTTATGAGCAGCACTGCCATCTAAAAATAACTAAAGAGCACCAAGCTCTGTTTCTTCTCAA
TTGCCGTAGCTTCTTTCATTCTTTCACCATTACATAAGCAGCAAAACCAGGAATAACAGATAATAAATCCTCCTCTAGATAGATGACCAAGCACGACACC
CTTACAAGTACTTATTAAGAGAGTACAATACAGAGGATAAATGATAGCAAGAGGCAGCTTAAGAATCACAACGGAGAAGTCACAAAGCATGATAACACGA
TAGAACAAAAGCTTCTGAAAGGGTGGGTGCCTTAGGCAGAAGGCTTCTCCCACTTGAGGGGCTTCACCACCTCCCAGGTGAAGTCGGCGTCGTCCCTTCC
GAAGTGACCGTAAGCTGCTGTCTTGAGGTCAAGGTTGATGATGATCATGCCAGGCCTAAAGTCAAAGTTCTCCTTCACGATCTTGAGGATCTCCTTGTCA
GGAATCTTGCCGGTGCCGTACGTGTCAACAAACACAGAGAGTGGCTCAGGGACACCAATGGCGTAGGAAACCTGGACAATGGCACGGCGAGCAAGGCCAT
TTGCAACAATGCTCCACTGCGGTCGACCTTGGTCGGGTCCTTTCCAGAGAAAGCACCACCACCGTGAGCTCCCCAACCACCATAGGTGTCAATGATAATC
TTCCTGCCAGTGAGACCAGCATCACCATGAGGTCCACCAATGACAAAGCGACCGGATGGGTTCAGATGGAAGATGGTCTTCTCGTCAAGGTACTGCTCAG
GGATGACAGTCTCGTCATGCTGGGTAGAGATGAGGACAGTGTGGACACGAACTGGGACCATAGCACCACCCTCATTGCGGTACTCAACAGTCACCTGGGT
CTTTCCATCAGGCCTGAGCCAGGGGCA