Detailed information on CNT30189384


BLAST search results

BLAST vs Swiss-Prot:
sp|B0LXM0|METK_WHEAT, E-value = 2e-83

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673122Secale cerealeSetaria viridis53.9443.0987.5424forward
CNT30521125Secale cerealeSetaria italica51.5361.7487.41405forward
CNT30266729Secale cerealeChenopodium quinoa53.9432.8982.31424forward
CNT30628391Secale cerealeVigna unguiculata33.4622.9382.13263forward
CNT30708643Secale cerealeGlycine max28.8840.981.06227forward
CNT30301451Secale cerealeTriticum aestivum34.7376.2697.07273forward
CNT30225935Secale cerealeHordeum vulgare38.0468.2693.65299forward
CNT30471290Secale cerealeSaccharum spontaneum56.6249.5582.47445forward
CNT3014998Secale cerealeZea mays34.148.3886.19268forward
CNT30368076Secale cerealeSorghum bicolor52.5437.9285.23413forward
CNT30597069Secale cerealeOryza meridionalis33.5913.1987.88264forward
CNT3022365Secale cerealePopulus trichocarpa18.5828.7488.36146forward
CNT30101941Secale cerealeOryza rufipogon53.6950.5483.18422forward
CNT30496713Secale cerealeDigitaria exilis56.4929.4883.33444forward
CNT30116792Secale cerealeOryza nivara18.4522.5589.66145forward
CNT30551132Secale cerealeOryza brachyantha12.2124.8790.6296forward

Expression of CNT30189384

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MMIMPGLKSKISLSGILPVPYVSTNTESGSGTPIA*

>peptide 2 (72 aa)
MSSPATIGVNDDLPASETSIAVRRAPSLVARTWLRGMNSGVSSVAYPNICPWSPAPISSGRLVKWPWTPCAMS

>peptide 3 (40 aa)
MAEGHELRSLISCISKHMPLVTSANLLRPLGKVAMDTLRDV

>peptide 4 (38 aa)
MQRRAMPLATMLFAACLATYAPLRSTLVGSLPEKAPPP*

Sequence

>CNT30189384
GGATAGTTTCAATCTTGTCGCCACCATTACAATGACATGAGCAGATAAGGACACAAGTAGCACACCCACAGTACAAGCACCTCTAAACAGACACTGAAAA
AAAAAACTTGCACCGTTTCAGCACTGGAGCAGTGAATAGAGATATTACTTGCTGCGATAGGTAAAACTAAATTTATTCAGAGACTTCGCTAAGTGTTTGC
TCAGGCAGAAGGCTTCTCCCACTTGAGGGGCTTCACCACCTCCCAGGTGAAGTCCGCACCCTCCCTGCCGAAGTGCCCGTATGCCGCCGTCTTGAGGTAG
CGCCCCTTCCCGCCCCTCTTAAGGTCGAGGTTGATGATGATCATGCCTGGCCTGAAGTCGAAGATCTCCTTGTCAGGGATCTTGCCCGTGCCGTATGTGT
CGACAAACACTGAGAGTGGTTCAGGCACGCCAATAGCATAAGACACCTGGACAATGCAGCGACGGGCAATGCCACTAGCCACAATGCTCTTCGCCGCCTG
CCTTGCAACATATGCACCACTGCGGTCAACCTTGGTCGGGTCCTTGCCAGAGAAAGCGCCTCCACCATGAGCTCCCCAGCCACCATAGGTGTCAATGATG
ATCTTCCTGCCAGTGAGACCAGCATCGCCGTGAGACGAGCACCAAGCTTGGTAGCAAGAACATGGCTGAGGGGCATGAACTCAGGAGTCTCATCAGTTGC
ATATCCAAACATATGCCCCTGGTCACCAGCGCCAATCTCCTCAGGCCGCTTGGTAAAGTGGCCATGGACACCCTGCGCGATGTCAG