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Detailed information on CNT30224947


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678059Hordeum vulgareSetaria viridis26.8714.696.279forward
CNT30523531Hordeum vulgareSetaria italica25.8511.0893.4276forward
CNT30318276Hordeum vulgareCorylus avellana26.197.4793.5177forward
CNT30549981Hordeum vulgareIpomoea triloba26.1916.0190.9177forward
CNT30517219Hordeum vulgareJuglans regia26.194.1593.5177forward
CNT30500546Hordeum vulgareCoffea canephora26.5316.8592.3178forward
CNT30199009Hordeum vulgarePisum sativum26.1914.592.2177forward
CNT30494259Hordeum vulgareOlea europaea26.1915.2893.5177forward
CNT30503465Hordeum vulgareNicotiana attenuata23.4713.2995.6569forward
CNT30708369Hordeum vulgareGlycine max26.1912.7793.5177forward
CNT30564366Hordeum vulgareActinidia chinensis26.1913.2890.9177forward
CNT30544307Hordeum vulgareBrassica napus26.1915.4990.9177forward
CNT3060340Hordeum vulgareArabidopsis lyrata26.1915.6592.2177forward
CNT3078393Hordeum vulgareBrassica juncea26.1917.6290.9177forward
CNT30261673Hordeum vulgareBrassica rapa26.197.0389.6177forward
CNT30601041Hordeum vulgareFraxinus excelsior26.1913.892.2177forward
CNT30447879Hordeum vulgareSaccharum spontaneum27.5515.7396.381forward
CNT30136282Hordeum vulgareLolium perenne26.8714.3198.7379forward
CNT3013205Hordeum vulgareZea mays26.878.7293.6779forward
CNT30608736Hordeum vulgareGossypium raimondii26.1913.5190.9177forward
CNT30207458Hordeum vulgareHelianthus annuus25.8513.6793.4276forward
CNT30127630Hordeum vulgareCorymbia citriodora26.1917.2393.5177forward
CNT30716113Hordeum vulgareMalus domestica golden28.5714.6194.0584forward
CNT30626608Hordeum vulgareDaucus carota26.199.0692.2177forward
CNT30363122Hordeum vulgareSorghum bicolor23.8117.995.7170reverse complement
CNT30596688Hordeum vulgareOryza meridionalis27.2114.8493.7580forward
CNT30359565Hordeum vulgareLactuca sativa23.4710.2494.269forward
CNT30153721Hordeum vulgarePrunus persica26.8716.0291.1479forward
CNT30704139Hordeum vulgarePrunus avium28.9116.8390.5985forward
CNT30642554Hordeum vulgareCannabis sativa26.1913.3492.2177forward
CNT3032717Hordeum vulgareTheobroma cacao26.538.9292.3178forward
CNT3057178Hordeum vulgareAmborella trichopoda26.1913.3494.8177reverse complement
CNT30326905Hordeum vulgareAsparagus officinalis26.1917.5497.477forward
CNT30579574Hordeum vulgareEchinochloa crusgalli27.2116.1697.580forward
CNT30499031Hordeum vulgareDigitaria exilis27.8915.3396.3482forward
CNT30593864Hordeum vulgareEragrostis curvula27.5514.5297.5381forward
CNT30604511Hordeum vulgareOryza punctata26.5314.9793.5978forward
CNT30556718Hordeum vulgarePanicum hallii26.1917.1996.177forward
CNT30551345Hordeum vulgareOryza brachyantha25.5113.3994.6775forward
CNT30725701Hordeum vulgareLupinus angustifolius26.194.6793.5177forward
CNT3050740Hordeum vulgareCucumis sativus26.1911.6792.2177forward

Expression of CNT30224947

Peptides detected in this lncRNA

>peptide 1 (40 aa)
ISTRREPPPPTIYGDRVRPHTSAAAAAAANRRARPTPPPR*

>peptide 2 (64 aa)
KYEARAAAANNLRRSGSSTHLRRRRRRREPESEADTAAAMRAKWKKKRMRRLKRKRRKMRQRSK*

Sequence

>CNT30224947
ATAAGTACGAGGCGAGAGCCGCCGCCGCCAACAATCTACGGAGATCGGGTTCGTCCACACACCTCCGCCGCCGCCGCCGCCGCCGCGAACCGGAGAGCGA
GGCCGACACCGCCGCCGCGATGAGGGCCAAGTGGAAGAAGAAGAGGATGAGGAGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGCGATCCAAGTAGGCG
CCTTGGAGGATGGAGGCGTAGCATCATCTTACATCCAGGCATCGAAACACCGAGGGATGATGGCATAGGCTTGTGATTCCTGATGTGTTCTGCC