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Detailed information on CNT30716113


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677986Malus domestica goldenSetaria viridis11.6521.4195.5267forward
CNT3046844Malus domestica goldenPrunus dulcis30.2634.3288.51174forward
CNT30191267Malus domestica goldenSecale cereale13.7423.2497.4779forward
CNT30224947Malus domestica goldenHordeum vulgare14.7828.9194.1285forward
CNT30467175Malus domestica goldenSaccharum spontaneum10.7826.510062forward
CNT30219096Malus domestica goldenKalanchoe fedtschenkoi13.5722.2296.1578forward
CNT3067939Malus domestica goldenLeersia perrieri11.4822.9298.4866reverse complement
CNT30722009Malus domestica goldenTriticum spelta14.7820.2994.1285forward
CNT30153721Malus domestica goldenPrunus persica30.2635.2988.51174forward
CNT30704139Malus domestica goldenPrunus avium30.2634.4687.36174forward

Expression of CNT30716113

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MWIPGRIRCQCLELLYPLLDLGSYMMHCFV

>peptide 2 (33 aa)
EIRVQTHQKPCSFLLETSRPSFWYHSSSISHRS*

>peptide 3 (93 aa)
RLGFRRIRNPVAFFWRRRGHRSGITVAAFPIDHEGQVEEEAHEEAEEEAPKDEAEIQVAAFCSVVRIAAFSWGELTHVRLFCRLEVAREGLLL*

Sequence

>CNT30716113
CGAGATTAGGGTTCAGACGCATCAGAAACCCTGTAGCTTTCTTCTGGAGACGTCGCGGCCATCGTTCTGGTATCACAGTAGCAGCATTTCCCATCGATCA
TGAGGGCCAAGTGGAAGAAGAAGCGCATGAGGAGGCTGAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAGCCGCCTTTTGCTCCGTCGTCCGC
ATCGCCGCCTTCTCATGGGGTGAGCTAACCCATGTGAGGTTGTTTTGTAGACTGGAGGTTGCTCGTGAGGGTTTATTACTCTGAATTTCGGTTTTAGTAG
TTTCGGGATTCTAACTATGTGGATGTTAATGTTCTTATGACTGGTTTAACTCTGCTTCTAATTACATAATTAAGTATCGATTTGGTTAAATTGCAATGGC
TTCTACTTGCTTTGATGTTTTTCGACTTTGATTTCCTCTGTTATTTTTTGTTCTAAGTTGAATGATTGTGTTGTTATGATGCAATGTGGATCCCGGGTCG
CATTAGATGTCAATGTTTAGAGCTTTTGTATCCTCTGCTCGACCTGGGATCGTATATGATGCATTGTTTTGTGCC