Detailed information on CNT30363122


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695362Sorghum bicolorOryza sativa15.8622.7193.5562forward
CNT30677986Sorghum bicolorSetaria viridis18.6723.3298.6373reverse complement
CNT30317675Sorghum bicolorCorylus avellana16.3723.7993.7564reverse complement
CNT30224947Sorghum bicolorHordeum vulgare17.923.8195.7170reverse complement
CNT30393731Sorghum bicolorTriticum turgidum18.6721.3595.8973forward
CNT30590300Sorghum bicolorMusa acuminata18.1635.591.5571reverse complement
CNT30449388Sorghum bicolorSaccharum spontaneum61.3846.6989.58240reverse complement
CNT30137004Sorghum bicolorLolium perenne17.929.9191.4370reverse complement
CNT3013205Sorghum bicolorZea mays35.8115.4592.14140reverse complement
CNT3067939Sorghum bicolorLeersia perrieri17.3923.6194.1268forward
CNT30721781Sorghum bicolorTriticum spelta17.6520.7892.7569reverse complement

Expression of CNT30363122

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MEKKMFRNNIQMTVGFITDHGQTMIVKTFRYITDSVTKEN*

>peptide 2 (40 aa)
MVLYGEKNVSEQYSDDGRLHYRSRTDDDCKDLQIHYRLCY*

Sequence

>CNT30363122
GGACGAGATTTTCTTTATGGTAAAAATTAGGCAACACAAGTAACGAAACCAAAGGATAACACTTGATGCAATAACGGTTTTATGAAGAGAAAAAAAAGTT
TCGGAACCGTATTCGGATGATTCAATAATGGTTCTATATGGAGAAAAAAATGTTTCGGAACAATATTCAGATGACGGTAGGCTTCATTACAGATCACGGA
CAGACGATGATTGTAAAGACCTTCAGATACATTACAGACTCTGTTACTAAAGAAAACTAAAATTATTCGGTAAACAGCAACCGAACACAAGGACTCCAGG
CGGACACTCCATGGATCTGCCTACTTGGATCTCTGCCTCATCTTTCGGCGCTTCCTCTTGAGCCGCCTCATCCGCTTCTTCTTCCACTGCA