Detailed information on CNT30544307


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30224947Brassica napusHordeum vulgare16.127.2191.2580forward
CNT30395161Brassica napusTriticum turgidum16.122.4791.2580forward
CNT3078393Brassica napusBrassica juncea32.3936.8493.79161forward
CNT30219096Brassica napusKalanchoe fedtschenkoi16.122.7992.580forward
CNT30721855Brassica napusTriticum spelta16.121.0591.2580forward

Expression of CNT30544307

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MGLRKCSARLKKHGPYRPNPSYIIWSGALD*

>peptide 2 (38 aa)
MFWINSLFIYLHRQRFILFFLDLFILEIVSASNNFLEA*

>peptide 3 (31 aa)
LVLLIINFKSLDGPSKMFGPFKKTWPLSPKP*

Sequence

>CNT30544307
TCTTGTTCTTCTTATAATTAATTTCAAATCCTTAGATGGGCCTTCGAAAATGTTCGGCCCGTTTAAAAAAACATGGCCCTTATCGCCCAAACCCTAGCTA
TATAATATGGAGTGGTGCGCTCGACTAACAACACAGCGGAGGAGAATCTGAGTTCGGCGACTTGACGATGAGGGCGAAGTGGAAGAAGAAGCGGATGAGG
AGACTGAAGAGGAAGCGCAGGAAGATGAGACAGCGATCCAAGTAGTCTCTGTGTCTCCATGCCTATCCATAACTCTCTGAACCTTTTATGTTTTGTGTTT
TTTTACGTTTAAGTTGGAACAATCGTTTGTAGAACATGTTTTGGATCAACTCCCTTTTTATTTATCTACACAGACAGAGATTTATCTTATTTTTCTTGGA
TCTGTTTATTTTGGAGATTGTGAGTGCAAGTAACAATTTTCTAGAGGCTTGATAAATGATCTAAACCTACTCTCATATCCTTTTTTAATTAAGAAAA