Detailed information on CNT30678059


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692294Setaria viridisOryza sativa16.8222.8198.991forward
CNT30224947Setaria viridisHordeum vulgare16.8230.9596.791forward
CNT30446643Setaria viridisSaccharum spontaneum18.4820.6696100forward
CNT30137004Setaria viridisLolium perenne15.7136.3295.2985forward
CNT309411Setaria viridisZea mays20.3318.3390110forward
CNT30722009Setaria viridisTriticum spelta16.8221.7296.791forward
CNT30341608Setaria viridisEragrostis tef20.1517.3898.17109forward
CNT30579574Setaria viridisEchinochloa crusgalli86.6994.7583.58469forward
CNT30499031Setaria viridisDigitaria exilis94.6495.781.25512forward

Expression of CNT30678059

Peptides detected in this lncRNA

>peptide 1 (46 aa)
IKPSRLGFLLSPAPSLYKSEARANAATIPVRPQLAKSAAAASTETL*

>peptide 2 (30 aa)
MQEMFTFLGSSFIFSSSKLWSCSKAGFYVM*

Sequence

>CNT30678059
CCATCAAGCCATCACGACTAGGGTTTTTGCTTTCCCCAGCACCCAGCCTCTATAAATCAGAAGCCCGAGCCAACGCCGCCACCATCCCCGTTCGTCCCCA
ACTCGCCAAATCCGCAGCCGCCGCAAGCACAGAGACCCTCTAGATCGAGCGCGAGCTCCACCCCCGCCGCCGCGATGAGGGCCAAGTGGAAGAAGAAGAG
AATGAGGAGGCTCAAAAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAGGCTTGCCTGGAGGATGAAGGGAACTGTCTGTTGCATTGTGACCTAGGC
TTGTTAGGATAAACACCCCGACGTGCTTTGGTGTAGATGCAGGAGATGTTTACCTTCTTGGGGTCTAGTTTTATTTTTAGCTCATCAAAACTCTGGTCAT
GTTCTAAGGCTGGGTTTTATGTAATGTGAGGATAATATGTTGCTTTGTGACTGAGTTTATGCAGTTAAACGAGATTTCTTGCACTAAAAAATATACTTAC
TGCCTATCTGTTACCCTTGTGATCGGTAGTTGTTTCCGTTA