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Detailed information on CNT30579574


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692294Echinochloa crusgalliOryza sativa18.3822.8110091forward
CNT30678059Echinochloa crusgalliSetaria viridis94.7586.6983.58469forward
CNT30224947Echinochloa crusgalliHordeum vulgare18.5931.2997.8392forward
CNT30137004Echinochloa crusgalliLolium perenne17.3736.7596.5186forward
CNT309411Echinochloa crusgalliZea mays23.031991.23114forward
CNT30721977Echinochloa crusgalliTriticum spelta18.9920.8997.8794forward
CNT30499031Echinochloa crusgalliDigitaria exilis29.727.4893.2147forward
CNT30593864Echinochloa crusgalliEragrostis curvula21.411999.06106forward

Expression of CNT30579574

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MFLCDWFQQFNEISVSKYTCCLSVGCGLMLSHK

>peptide 2 (46 aa)
SPSTLPINQKRGPTPPASQFVPNSPTPPPQAERPGARARAPPPPPR*

>peptide 3 (71 aa)
FAQHPAYKSETRANTASIPVRPQLANPAAASRETRSSSASSTPAAAMRAKWKKKRMRRLKRKRRKMRQRSK*

Sequence

>CNT30579574
TTTCGCCCAGCACCCTGCCTATAAATCAGAAACGAGGGCCAACACCGCCAGCATCCCAGTTCGTCCCCAACTCGCCAACCCCGCCGCCGCAAGCAGAGAG
ACCAGGAGCTCGAGCGCGAGCTCCACCCCCGCCGCCGCGATGAGGGCCAAGTGGAAGAAGAAGAGAATGAGGAGGCTCAAGAGGAAGCGCCGAAAGATGA
GGCAGAGATCCAAGTAGGCGTGCCTGGAGGAGGAAGGGAATCGTCTCATGCATTAACTGCTAGGCTTGTTAGGATGATCCATCCTGATTTGCTTATGTTG
TAGATGTAGGAGCTGTGAACCTTTTTGGGTTCTAGTTTAATTTACTCTGGTCTTGTTCTAGAGGCTGGGTTTTATGTAATGTGAGGATAATCATATGTTT
CTTTGTGACTGGTTTCAGCAGTTTAATGAGATTTCTGTCTCAAAATATACTTGCTGCCTATCTGTTGGTTGCGGATTGATGTTGTCTCATAAAGC