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Detailed information on CNT30551345


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694844Oryza brachyanthaOryza sativa20.3631.1592.98114forward
CNT30677986Oryza brachyanthaSetaria viridis11.2520.1398.4163forward
CNT30224947Oryza brachyanthaHordeum vulgare1528.5795.2484forward
CNT30395161Oryza brachyanthaTriticum turgidum1523.695.2484forward
CNT30590300Oryza brachyanthaMusa acuminata10.1828.591.2357forward
CNT30470222Oryza brachyanthaSaccharum spontaneum11.2524.1493.6563forward
CNT30137004Oryza brachyanthaLolium perenne14.8235.4791.5783forward
CNT30219096Oryza brachyanthaKalanchoe fedtschenkoi14.6423.3691.4682forward
CNT30722009Oryza brachyanthaTriticum spelta1520.0595.2484forward
CNT30581427Oryza brachyanthaEchinochloa crusgalli1520.1995.2484forward
CNT30499286Oryza brachyanthaDigitaria exilis152094.0584forward

Expression of CNT30551345

Peptides detected in this lncRNA

>peptide 1 (67 aa)
KSKAIVLAPPPPPDRSACPPLARPDLGARRPVAKSGERHRRDEGQGWKKKRMRRLKRKRRKMRQRSK*

>peptide 2 (31 aa)
KAKPSCSRRRRRRTDPLVLLSPAQTLELAVR*

>peptide 3 (33 aa)
MGVCDCNGHQYFHSSIICLQILNLELCLQILIM*

>peptide 4 (36 aa)
MDTNISIVPLSVYKFSTLSYVCKFSLCEGLELYPYL*

Sequence

>CNT30551345
TAAAAGCAAAGCCATCGTGCTCGCGCCGCCGCCGCCGCCGGACCGATCCGCTTGTCCTCCTCTCGCCCGCCCAGACCTTGGAGCTCGCCGTCCGGTAGCG
AAGAGCGGGGAGCGGCACCGCCGCGATGAGGGCCAAGGGTGGAAGAAGAAGAGGATGAGGCGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCA
AATAGTCCTAAGACGATGGACTGATGGAGGTCTTTGCCTTTCTGCTGTCGTCGTATGAACTCTAGTTTATTTTTCTTGTTTAGTAAGAGAAAAGGAAAAC
TCAACTGGAATCATTGTATCTTTCGATCTTTGTCATAATGGGAGTATGTGATTGTAATGGACACCAATATTTCCATAGTTCCATTATCTGTCTACAAATT
CTCAACCTTGAGTTATGTCTGCAAATTCTCATTATGTGAAGGGCTTGAGCTCTATCCTTATCTATAGGAGAAGCTTTCTTCTGGAGTTCTAACTTTCGCC
TTGTTTGGAGAGAGCCTTTTGCTGTTGTGAATTAGCATTCCTCATATAACTTGTCCTCGT