Detailed information on CNT3078393


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692294Brassica junceaOryza sativa18.7620.5590.2482forward
CNT30224947Brassica junceaHordeum vulgare18.3127.2191.2580forward
CNT30395161Brassica junceaTriticum turgidum18.3122.4791.2580forward
CNT30544307Brassica junceaBrassica napus36.8432.3993.79161forward
CNT30260384Brassica junceaBrassica rapa21.748.5392.6395forward
CNT30611796Brassica junceaArabis alpina22.8822.4289100forward
CNT30467175Brassica junceaSaccharum spontaneum14.1926.593.5562forward
CNT30721855Brassica junceaTriticum spelta18.3121.0591.2580forward
CNT30115234Brassica junceaEutrema salsugineum24.4926.2392.52107forward

Expression of CNT3078393

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MFFVVLHFKLEQWCVEHALLAHYLLSSIKQRFITAYNFLDIFCLFEVYSLDE*

Sequence

>CNT3078393
CCGAAACCCTAGCTATATAAGATGGAGTGGAGTGCTCGACGAAACAACAAAGCGGAGGAGGATCTGATTTCGGCGACTTGACGATGAGGGCGAAGTGGAA
GAAGAAGCGCATGAGGAGACTGAAGAGGAAGCGCAGAAAGATGAGACAGCGATCCAAGTAGTCTGTCTGTGTTTCAAATCCATAAAATCTCTGTCATTCC
TTTCTAGTTTCGTTCTTGAACCTTTTTATGTTTTTTGTTGTTTTACATTTTAAGTTGGAACAATGGTGTGTAGAACATGCTTTGCTTGCTCACTACCTTT
TATCATCTATAAAGCAGAGGTTTATTACGGCTTATAATTTTTTGGATATCTTCTGTTTATTTGAAGTTTATAGCCTTGATGAATGATCAAAATATACTCT
TGTACCCATTTTATTGAGAAAAGCAACATATACCTAC