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Detailed information on CNT30405509


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 2e-20

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30372056Beta vulgarisArabidopsis thaliana13.8954.5682.39335forward
CNT30379782Beta vulgarisManihot esculenta13.1450.0879.81317forward
CNT30526207Beta vulgarisPhaseolus vulgaris11.5724.2481.72279forward
CNT30631224Beta vulgarisVigna unguiculata13.0238.5379.94314forward
CNT30486017Beta vulgarisOlea europaea8.6721.1382.3209forward
CNT30711423Beta vulgarisGlycine max22.655.1183.3545forward
CNT3045167Beta vulgarisPrunus dulcis5.3136.2683.59128forward
CNT30303678Beta vulgarisTriticum aestivum6.0922.0781.63147forward
CNT30397679Beta vulgarisTriticum turgidum4.7341.0181.58114forward
CNT3085597Beta vulgarisVigna radiata13.6423.8480.85329forward
CNT30544167Beta vulgarisBrassica napus21.85102.1378.94527forward
CNT30238557Beta vulgarisBrassica oleracea13.9351.1482.74336forward
CNT30173588Beta vulgarisTrifolium pratense8.5420.6279.13206forward
CNT30145920Beta vulgarisMedicago truncatula6.5920.9287.42159forward
CNT30442289Beta vulgarisAegilops tauschii6.0923.2681.63147forward
CNT30311401Beta vulgarisCamelina sativa22.6469.278.39546forward
CNT3059858Beta vulgarisArabidopsis lyrata22.5194.7678.64543forward
CNT3082076Beta vulgarisBrassica juncea22.6465.8681.14546forward
CNT30264551Beta vulgarisBrassica rapa13.9343.5881.85336forward
CNT30611432Beta vulgarisArabis alpina21.6455.379.69522forward
CNT30597278Beta vulgarisFraxinus excelsior12.7761.1178.57308forward
CNT30608086Beta vulgarisGossypium raimondii9.1256.2784.55220forward
CNT30217954Beta vulgarisKalanchoe fedtschenkoi5.0633.8981.15122forward
CNT30649241Beta vulgarisRosa chinensis14.8831.5581.06359forward
CNT30210187Beta vulgarisHelianthus annuus22.5566.577.94544forward
CNT30625164Beta vulgarisDaucus carota13.4327.9879.63324forward
CNT30687021Beta vulgarisTriticum urartu5.4726.9981.82132forward
CNT30350305Beta vulgarisEragrostis tef7.5922.1881.42183forward
CNT30479074Beta vulgarisArabidopsis halleri22.5194.1178.82543forward
CNT30621314Beta vulgarisCajanus cajan22.5143.0680.85543forward
CNT30359331Beta vulgarisLactuca sativa7.5521.1182.97182forward
CNT30422640Beta vulgarisPapaver somniferum4.124.2183.8499forward
CNT30573352Beta vulgarisVitis vinifera14.6454.1480.45353forward
CNT3027741Beta vulgarisTheobroma cacao8.9149.279.53215forward
CNT30118654Beta vulgarisCitrus clementina6.830.4885.98164forward
CNT3037927Beta vulgarisCucumis melo7.4237.4582.12179forward
CNT30329767Beta vulgarisDioscorea rotundata6.1824.3583.22149forward
CNT30150205Beta vulgarisBrachypodium distachyon4.1523.8184100forward
CNT30725700Beta vulgarisLupinus angustifolius7.7921.0187.23188forward
CNT3048728Beta vulgarisCucumis sativus3.4421.7884.3483forward

Expression of CNT30405509

Peptides detected in this lncRNA

>peptide 1 (94 aa)
MDFSSFPKPNGLKIGPRSIAFPWTLGCTNPAIYGARRSPLVPSQTQTMCKGQPSNCRCLLVGSHQFGTMGGLFQLGSDQLFLGFRARLHLLHLA*

>peptide 2 (40 aa)
MATTFNNINTYSLILWITVLIHIIFSHGSGKLKPYSTKHN*

>peptide 3 (43 aa)
MNPPVPSGSESPSGSNPKSPGRLHGLKHIKLGVKSSWISSCMS*

>peptide 4 (55 aa)
MKGSASMQTKGACLLLAVNKFPYLGKISQSPTNLIRKMKNPVVLDGCLSDYVNSY*

Sequence

>CNT30405509
GTGGATCTTATACACAAGTAGTATCTATTAAATTGAATGGCCACTACTTTTAATAACATTAATACTTACTCCTTAATTTTGTGGATCACCGTCTTAATTC
ACATAATATTTTCACATGGGAGTGGAAAGTTGAAACCATATAGTACAAAACATAATTGACCATGAGAAAAAAAAAAAGATGTGAGAGAATTTCTTAGTGG
AACTTGAGACTAGTCAAGACGTTGTTGTTGACTGGATCAGCCAAGTGATCAAGGAGGTTTTGGTATGGCCCAACACCAGTTACAAGACCTTGAATAAAGT
AGCCCAAGATAGCCAACATAGCCAACCTACCATTCTTTACTTCCTTAAGCTTAAGCTCCTTCATGGACTTCTCATCCTTTCCAAAGCCCAATGGGTTGAA
AATAGGCCCAAGAAGTATTGCTTTCCCATGGACCCTGGGTTGTACCAATCCTGCAATCTACGGTGCTCGGCGAAGCCCATTAGTGCCATCTCAAACACAA
ACAATGTGTAAGGGTCAGCCCAGTAATTGTAGGTGCCTGCTGGTGGGATCACACCAGTTTGGAACCATGGGAGGGCTGTTTCAGCTGGGATCAGACCAGC
TTTTCCTAGGATTTCGGGCGCGATTGCACCTGCTGCACCTAGCATAGCGAAACGACCGTTGATGATCTCACCATAGGCTAACCATCTAGGCTCAATGAAC
CCACCAGTGCCTTCTGGGTCTGAGAGTCCTAGTGGGTCGAACCCGAAATCTCCTGGAAGACTGCATGGTTTAAAGCATATCAAGTTAGGTGTAAAGTCTT
CTTGGATTTCAAGTTGTATGAGCTAAGTAATAGTATTAGGCTATGTTTGGCAAAACTGACTGAAATGGAGCTGAAACTGATAAGGTGGCTGAAACTGATT
AGGTAACACCATCTTTTTAAATCAAAGTATAACACTATAAAAAAGGAAAGCAATCTTTGACTAATTTACGTAGAACAAACAATAATACAAAAATAAAGTG
AAAGTTATAAACTTACGTCACACTCACTTCACCTGAGTTTTACTCGACGGAGATTATCTTCTCTATTCAAAACTTTTTATTAACAAGTTGAAATGAATTC
TACAATTTAAAAGCAATTTTTGTTGTTGTTGATTTTCTAGTGTGTTACGTTTACTGTTTAATCTAATGATTCCTCCTTTTTTTCCATTACAATTTGATTA
TTTCATATGTTAGTGCACAACTTTTGCTATTACTATATTTAATTTTGTAAATGGTATTATAAAAATATATATTGAGATGTATCCAATAACATCTTACATG
TTAAGTTTATATGTGTATAATAGTATAAAAGAGTGATCAAAGGTATCACATGAATTATTACATTGATATTGTTAGGCTCATGTTTATTCTGTATTCACAA
GAGCAAAATAATCATAAATAGTGACTAATCATAGTTTTAACATATGATTATACGAGTTTCCACATAATAGTAATCATGTCAACGTATATGTCAATATGTG
AATATATTAGCTGGGAGACTGAGAAATAAACAACATTCCAGAACATCAAGGCATGAACTCTCATTCCATTTCATCAACGATAAGATAAAAAAAACGGGTG
AGATCATCGAGTGACAACAATGAGATGGAGGGACTAAGAAACAAACAAAAATGCAAATCATAATCATAAACTATTACTGTACATCAAAATTGTAAACTAC
AGAAATCGAAGTTACAAGGTCTTGTATCATTACCTGCCATCCAAGTATGAAAGGCTCTGCTTCGATGCAAACCAAAGGGGCCTGTTTGCTCCTTGCTGTT
AATAAATTTCCATATTTGGGAAAAATAAGTCAATCACCCACAAATTTAATTAGAAAAATGAAGAATCCTGTAGTCCTGGACGGCTGCTTATCTGATTACG
TTAATTCATATTAAGGCTCCGTTCTTTGCACTAAACTGAATTGAATTGAATTTGTCTAAACCGAACTTAACTTAATATGTTTGAACGAAAGTTAATCAAA
ACTGAGAGTAAACTAAGTGAATTGATATATGAACGTGTCTGAACTAAACTGAACTAAGTTTTTATTAATTTAGTCCAAAAGAATATAATCTCAAATCTCC
TAATATAGTGTGGTTTTTCGAATAATGAACTAGGATCGGAGTATGTCAAAACATCGGCTAGAAAAGTTAGAACTCAAAAACTAAACATGGAGAATAATAT
CGAACAAGCTCATATTTTGTAATATACGTAAATCATTTTTCCAAAACAAACATGACCATTGACCAGTATAACTTCGACTAGTTTAATTTGAGTTCATCAT
CAATTTATATCACCACCTTTAATAAAAAAATCAATTTATGTAATCTATTAGCATTAAAATCTCAAAACCAAAAACTGAAAGGTGAAAGAAATATTGAATG
AGGTAAGTACCT