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Detailed information on CNT30350305


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 1e-86

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30405509Eragrostis tefBeta vulgaris22.187.5981.42183forward
CNT30125939Eragrostis tefPhyscomitrium patens14.5535.9383.33120forward
CNT30397679Eragrostis tefTriticum turgidum17.2151.0890.14142forward
CNT30611624Eragrostis tefArabis alpina21.9417.9480.66181forward
CNT3055927Eragrostis tefAmborella trichopoda14.6727.9488.43121forward
CNT30115627Eragrostis tefOryza nivara41.5820.0486.88343forward

Expression of CNT30350305

Peptides detected in this lncRNA

>peptide 1 (79 aa)
MKYPRMASMASLPFLISLSLSSLSDFSSLPNPSGLKIGPPGNFSRPRKYCLPMEPGLYQSCSRRCSAKPMSAISKTKSV*

>peptide 2 (33 aa)
MNRDAVPQTLHHHQPTRTNPHTSRRSIAPTGSS*

>peptide 3 (35 aa)
MQCLKRFTIINQRARIHTHLVAQLHRQAAASNATG*

Sequence

>CNT30350305
TACCGCTTCATGTGAAACTGCCTGGATAAACCCTGGCAAACTAAAGGTTATATGATACTGTACCTAGCTAGGTTTGATAACACGAAGTAATTGTTGGCAA
TGTTGAGGTAGTATCACGGTAGGAGGAATTGTACATTAATTTACCATGTGCAATACAATATCCGGTCTCAACAAGACGATCAATTGCTATTTTGTTACAA
GCAGCAGGCTGGCGATGCATGAATCGTGATGCAGTGCCTCAAACGCTTCACCATCATCAACCAACGCGCACGAATCCACACACATCTCGTCGCTCAATTG
CACCGACAGGCAGCAGCTAGCAACGCAACGGGCTAGAAAGAAAGGCAGTAAAGCGCAATCTTTCTAGTGGAACTTGAGGCTGGTGAGGACGTTGTTGTTG
ACGGGGTCGGCGAGGTGGTCGAGCAGGTTCTGGTAGGGTCCTTCGCCGGTGACAAGGCCCTGGATGAAGTACCCCAGGATGGCGAGCATGGCGAGCCTGC
CGTTCTTGATCTCCTTGAGCTTGAGCTCCTTGAGCGACTTCTCGTCCTTGCCGAATCCGAGCGGGTTGAAGATCGGGCCGCCGGGGAACTTCTCGAGGCC
GAGGAAGTACTGCTTGCCCATGGAGCCCGGGTTGTACCAGTCCTGCAGCCGGCGGTGCTCGGCGAAGCCCATGAGCGCCATCTCGAAGACGAAGAGCGTG
TAGGGGTCGGCCCAGTAGTTGTAGGTGCCGGCGGGCGGGATGACGCCCGTCTTGAACCACGGCAGCGCTGTCTCCGCCGGGATCAGGCCCAGCTTGCCGA
ACACCTCCGGGGCGATGGAGCCCGC