Detailed information on CNT30611432


BLAST search results

BLAST vs Swiss-Prot:
sp|Q36718|CB120_HORVU, E-value = 9e-24

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673615Arabis alpinaSetaria viridis18.9638.0981.01179forward
CNT30405509Arabis alpinaBeta vulgaris55.321.6479.69522forward
CNT30711311Arabis alpinaGlycine max59.5356.679.18562forward
CNT30540204Arabis alpinaBrassica napus60.49102.8889.14571forward
CNT30233607Arabis alpinaBrassica oleracea60.0672.0589.07567forward
CNT30173588Arabis alpinaTrifolium pratense23.5222.2281.53222forward
CNT30311401Arabis alpinaCamelina sativa60.772.6288.31573forward
CNT3059858Arabis alpinaArabidopsis lyrata59.4397.9186.63561forward
CNT3082076Arabis alpinaBrassica juncea61.7670.3391.25583forward
CNT30259451Arabis alpinaBrassica rapa60.8178.7488.85574forward
CNT30475143Arabis alpinaSaccharum spontaneum18.9623.4980.45179forward
CNT30210187Arabis alpinaHelianthus annuus20.4423.5984.46193forward
CNT30350311Arabis alpinaEragrostis tef36.9742.7777.94349forward
CNT30479074Arabis alpinaArabidopsis halleri60.4998.9686.51571forward
CNT30368340Arabis alpinaSorghum bicolor18.9639.679.89179forward
CNT30583132Arabis alpinaEchinochloa crusgalli16.3122.3581.17154forward
CNT30557458Arabis alpinaPanicum hallii18.9635.881.56179forward

Expression of CNT30611432

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MKKLMVPRESKRYKIMETNIKHMKWYDHLSGT*

>peptide 2 (30 aa)
GNKRKMTITASTVRLSRFLLRLVSGDTSET*

>peptide 3 (38 aa)
MGLPSSCMSLQVESHRFGTKEEQCLLESNQPFLESQGQ*

>peptide 4 (33 aa)
MIISVELEAGQDIVVDGIRQMIKKVLVWPNTSH*

Sequence

>CNT30611432
GGAAACAAGCGCAAAATGACCATTACTGCGAGTACTGTGAGACTTTCTCGTTTTCTGCTGCGTTTGGTTTCTGGAGATACAAGTGAAACATAATGGGTGT
TACAGCATGAAGAAGCTGATGGTACCAAGAGAAAGCAAAAGATACAAGATAATGGAGACCAACATAAAACACATGAAATGGTATGATCATCTCAGTGGAA
CTTGAGGCTGGTCAAGACATTGTTGTTGACGGGATCCGCCAAATGATCAAGAAGGTTCTGGTATGGCCCAACACCAGTCACTAGCCCCTGAATAAAGTAA
CCAAGGATAGCGAGCATAGCAAGTCTACCGTTCTTGATCTCCTTGAGTTTCAACTCTTTCATCGACTTCTCGTCTTTCCCAAACCCAAGAGGGTTAAAGA
AAGGTCCACCGGGTACTGTTTCCCCATAGATCCTGGGTTGTACCAGTCCTGCAACCTCCGGTGCTCAGCAAATCCCATAAGAGCCATCTCGAGAACGAAG
AGCGTGTATGGGTCTGCCCAGTAGCTGTATGTCCCTGCAGGTGGAATCACACCGGTTTGGAACCAAGGAAGAGCAGTGTCTGCTGGAATCAAACCAGCCT
TTCCTAGAATCTCAGGGGCAATAGCTCCAGCTGCACCCAACATAGCGAACCTCCCGTTGATAACCTCTCCGTAAGCTAACCATTTCGGCTCAATGAACCC
TCCAGTACCCTCTGGATCAGAAAGACCAAGCGGGTCGAATCCATAGTCACCAGGTGGAGTTGAAGCAGCTTTGACAACAAAGGAACTCTTCCTCACGGAC
ACAGATGGTTTTGAGCCGAATATCTGTCTAGCGGTCTGAACAGAGGAGGTAAGTGAAGAAGACACAAGTGCTTGTGCTGCCATTTTTCTCTGTTCCTTAA
CTCTTCTCTTCTGTCACCAAGAAATGATGATTGATGATGGTTCG