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Detailed information on CNT30173588


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30405509Trifolium pratenseBeta vulgaris20.628.5479.13206forward
CNT30711417Trifolium pratenseGlycine max21.8212.1888.99218forward
CNT3045175Trifolium pratensePrunus dulcis10.6123.1483.96106forward
CNT30238548Trifolium pratenseBrassica oleracea21.7225.7481.11217forward
CNT30145920Trifolium pratenseMedicago truncatula22.4229.4795.09224forward
CNT30264123Trifolium pratenseBrassica rapa21.4223.4680.84214forward
CNT30611432Trifolium pratenseArabis alpina22.2223.5281.53222forward
CNT30607765Trifolium pratenseGossypium raimondii20.3230.3484.73203forward
CNT30210187Trifolium pratenseHelianthus annuus19.1223.3581.68191forward
CNT30624860Trifolium pratenseDaucus carota20.6223.8782.52206forward
CNT30359331Trifolium pratenseLactuca sativa21.8225.2981.19218forward
CNT30422640Trifolium pratensePapaver somniferum14.8136.1983.11148forward
CNT30118654Trifolium pratenseCitrus clementina19.4236.0686.08194forward
CNT3037927Trifolium pratenseCucumis melo22.1246.2385.07221forward
CNT30725700Trifolium pratenseLupinus angustifolius21.8224.3687.61218forward

Expression of CNT30173588

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MKSILILNTLCYQTKLHIHYRLKEFLHYQLIITVKSLETFDFYDNHF*

Sequence

>CNT30173588
GTTGACACGATGCAATTTAATTCCAAAACACAAGAGAGTGAACTAAAAGATGGTTGAGTTTTTTGATAATAATATATAATAGCTTACAACAACCAAAAAA
GAGCAAAGAAAAGAATATATAATATAATACATTGATGATTTAGTGGAACTTGAGACTGGTCAAGATGTTGTTGTTGACAGGATCAGCCAAATGATCTAAA
AGGTTTTGATATGGTCCAACACCTGTAACAAGACCTTGAACAAAGTAACCCAATATTGCCAACATAGCTAACCTTCCATTCTTAACTTCTTTCAGCTTTA
ACTCTTTCAATGATTTCTCATCTTTACCAAAACCAAGAGGGTTAAAGAAAGGTCCACCAGGTAGTTGTATGTTCCTGCTGGTGGAATAACACCGGTTTGG
AACCAAGCGAGAGCGGTTTCTTGTGGAATTAAACCGGCTTTGCCGAGGATTTCAGGTGCTATTGCTCCTACTGCTCCCAACATTGCGTAGCGACCATTGA
TTATCTCGCCGTATGCTAGCCATCTTGGCTCAATAAAACCTCCTGTTCCTTCTGGATCTGAAAGTCCTAGAGGATCAAATCCATAGTCACCTGGAAGGCT
GCAGGTGATGATGATGATAATGTCAAATGAAGTCAATTTTGATTCTCAACACATTGTGTTACCAAACAAAGTTGCATATACATTACCGGCTTAAAGAGTT
TTTACACTATCAATTAATCATAACTGTCAAATCATTAGAAACGTTCGACTTTTATGATAACCACTTCTAAAATCATACACATGGACTCTATTTGGGTAAA
TAACTTAATTAAAAGCTTATAGTATAAACGCTTATCATATAAGTGTTTATGTGTAAGCTATTTCTATAACAAATGGTAAAATAAAACAATTTTCATACAA
GTTATAAGTTGTATTCATAAACTACCTTAGAAAACTTATGAAATAAACTAAGAACATCTTATAGACATGTCATAAGTTGTTTTCATACGTTCTCTCAAA