Detailed information on CNT3037927


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30405509Cucumis meloBeta vulgaris37.457.4282.12179forward
CNT30526207Cucumis meloPhaseolus vulgaris24.4810.1785.47117forward
CNT30631224Cucumis meloVigna unguiculata28.4516.6981.62136forward
CNT30486017Cucumis meloOlea europaea40.5919.6282.99194forward
CNT30711417Cucumis meloGlycine max48.1212.8583.04230forward
CNT3045175Cucumis meloPrunus dulcis27.8229.0485.71133forward
CNT3085509Cucumis meloVigna radiata26.9931.3183.72129forward
CNT30173588Cucumis meloTrifolium pratense46.2322.1285.07221forward
CNT30145652Cucumis meloMedicago truncatula48.1212.0686.52230forward
CNT3059858Cucumis meloArabidopsis lyrata4134.2179.08196forward
CNT30611624Cucumis meloArabis alpina47.0722.379.56225forward
CNT30607765Cucumis meloGossypium raimondii38.0827.284.62182forward
CNT30210187Cucumis meloHelianthus annuus41.4224.2184.85198forward
CNT30718929Cucumis meloMalus domestica golden27.8214.3387.97133forward
CNT30624860Cucumis meloDaucus carota49.3727.3580.08236forward
CNT30359331Cucumis meloLactuca sativa49.1627.2682.13235forward
CNT30422640Cucumis meloPapaver somniferum29.2934.2386.43140forward
CNT30118654Cucumis meloCitrus clementina43.7238.8584.69209forward
CNT30329767Cucumis meloDioscorea rotundata24.2718.9583.62116forward
CNT30725700Cucumis meloLupinus angustifolius45.424.2583.87217forward
CNT3048728Cucumis meloCucumis sativus35.7744.8898.25171forward

Expression of CNT3037927

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MAHQGKLGPCWWDDPCFEPWEGCFWWDQPQ*

>peptide 2 (29 aa)
LQSNPKGIVIHINIHYTNYNSHINPSSGI*

>peptide 3 (50 aa)
MTPVLNHGRAVSGGINPSDPKISGAMAPAAPNIANLPLITSPYANHFGSMN

>peptide 4 (40 aa)
MIQKILVRSNTSNKTLYKVTQNCQHCKPSILNFLQLQFLH*

>peptide 5 (31 aa)
MGGLFLVGSTPVIQRSLGLWLLLLPTLQTFR*

Sequence

>CNT3037927
GCTCCAAAGCAACCCAAAGGGGATTGTGATCCATATTAATATACATTACACAAATTACAATTCACATATAAACCCTTCTAGTGGAATTTAAGGCTGGTCA
AAATATTGTTGTTGACAGGGTCAGACAAATGATCCAAAAGATTTTGGTAAGGTCCAACACCAGTAACAAGACCTTGTATAAAGTAACCCAAAATTGCCAA
CATTGCAAGCCTTCCATTCTTAATTTCCTTCAACTTCAATTCCTTCATTGACTTCTCATCTTTACCAAACCCTAGTGGGTTGAACAATGGCCCACCAGGG
TAAGCTGGGTCCCTGCTGGTGGGATGACCCCTGTTTTGAACCATGGGAGGGCTGTTTCTGGTGGGATCAACCCCAGTGATCCAAAGATCTCTGGGGCTAT
GGCTCCTGCTGCTCCCAACATTGCAAACCTTCCGTTGATCACTTCGCCGTATGCCAACCATTTTGGCTCGATGAACCC