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Detailed information on CNT3082076


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 4e-22

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30405509Brassica junceaBeta vulgaris65.8622.6481.14546forward
CNT30711423Brassica junceaGlycine max66.9556.1280555forward
CNT30611432Brassica junceaArabis alpina70.3361.7691.25583forward

Expression of CNT3082076

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MFTQGVTTQRSWWYQRERNKIVGYMRMGYQHKTPWDDMI*

>peptide 2 (34 aa)
MAIDIVISYKRRICLHRVLQHKEAGGTKEKETRL*

>peptide 3 (31 aa)
MSLQVESHRFGTREEQCLLESDRPFLESQVQ*

>peptide 4 (40 aa)
MASIASLPFLTSLSFNSFIDFSSFPNPRGLKKDPRSIVYP*

Sequence

>CNT3082076
TGACAATCTTTTAAATATGTTCAGCAACTGAGTTTCTCGGTTATTGCTAAATACCAACCATTAATCCTAGAAGCTGTTCTTTATGGCCATTGACATTGTC
ATTTCTTACAAAAGACGAATATGTTTACACAGGGTGTTACAACACAAAGAAGCTGGTGGTACCAAAGAGAAAGAAACAAGATTGTAGGATACATGAGAAT
GGGATACCAACATAAAACACCATGGGATGATATGATATGATCATCTCAGTGGAACTTGAGGCTGGTCAAGACATTGTTGTTGACGGGATCCGCCAAATGA
TCAAGTAGGTTCTGGTAAGGTCCCACACCGGTCACTAGTCCCTGCACAAAATAGCCTAGGATGGCGAGCATCGCCAGTCTACCGTTCTTGACCTCCTTGA
GTTTCAACTCCTTCATTGACTTCTCGTCTTTTCCAAACCCAAGAGGGTTGAAGAAAGACCCAAGAAGTATTGTTTACCCATAGATCCTGGGTTGTACCAG
TCCTGCAACCTCCTGTGCTCGGCAAATCCCATCAAAGCCATCTCGAGAACAAAGAGTGTGTAAGGGTCTGCCCAGTAGCTGTATGTCCCTGCAGGTGGAA
TCACACCGGTTTGGAACCAGGGAAGAGCAGTGTCTGCTGGAATCAGACCGGCCTTTCCTAGAATCTCAGGTGCAATAGCTCCAGCTGCACCCAACATAGC
AAACCGCCCGTTGATGATCTCTCCGTAGGCTAACCATCTCGGCTCGATGAACCCTCCAGTACCCTCTGGGTCTGAAAGACCAAGCGGGTCGAATCCAAAG
TCGCCAGGTAAGCTGCAGAATCACAACAA