Detailed information on CNT30544167


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 1e-93

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30405509Brassica napusBeta vulgaris102.1321.8578.94527forward
CNT30173586Brassica napusTrifolium pratense39.5321.3481.37204forward
CNT3077625Brassica napusBrassica juncea94.5785.9297.75488forward
CNT3038106Brassica napusCucumis melo20.1620.9782.69104forward
CNT30725154Brassica napusLupinus angustifolius58.9150.6780.26304forward
CNT3048728Brassica napusCucumis sativus18.9925.7283.6798forward

Expression of CNT30544167

Peptides detected in this lncRNA

>peptide 1 (29 aa)
VELEAGQDIVVDWIRQMIKKVLVWPHTGH*

>peptide 2 (31 aa)
MSLQVESHRFGTKEGQCLLESNLLCQESQGQ*

Sequence

>CNT30544167
GTGGAACTTGAGGCTGGTCAAGACATTGTTGTTGACTGGATCCGCCAAATGATCAAGAAGGTTCTGGTATGGCCCCACACCGGTCACTAGTCCCTGCACA
AAATAGCCTAGGATTGCGAGCATAGCCAGTCTACCGTTCTTGACCTCCTTGAGTTTCAACTCCTTCATTGACTTCTCGTCTTTCCCAAACCCAAGAGGTA
CTGTTTGCCCATTGATCCTGGGTTGTACCAATCCTGCAACCTCCGGTGCTCAGCAAATCCCATCAAAGCCATCTCGAGAACAAAGAGTGTGTAAGGGTCT
GCCCAGTAGCTGTATGTCCCTGCAGGTGGAATCACACCGGTTTGGAACCAAGGAAGGGCAGTGTCTGCTGGAATCAAACCTGCTTTGCCAAGAATCTCAG
GGGCAATAGCTCCAGCTGCACCTAACATAGCGAACCTTCCGTTGATGATCTCTCCGTAGGCTAACCATCTTGGCTCGATGAAACCTCCAGTACCTTCTGG
GTCTGAAAGACCAAGC