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Detailed information on CNT30687021


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SYW8|LHCA2_ARATH, E-value = 3e-09

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691521Triticum urartuOryza sativa27.8146.4289.71136forward
CNT30673928Triticum urartuSetaria viridis27.6137.0990.37135forward
CNT30405509Triticum urartuBeta vulgaris26.995.4781.82132forward
CNT3045167Triticum urartuPrunus dulcis37.2251.5681.87182forward
CNT30125939Triticum urartuPhyscomitrium patens36.8153.8980180forward
CNT30303678Triticum urartuTriticum aestivum96.1170.5794.68470forward
CNT30225382Triticum urartuHordeum vulgare33.3330.8196.32163forward
CNT30397679Triticum urartuTriticum turgidum21.8838.49100107forward
CNT30540898Triticum urartuBrassica napus24.5421.5881.67120forward
CNT30238548Triticum urartuBrassica oleracea24.5414.2380.83120forward
CNT30442289Triticum urartuAegilops tauschii53.7841.6198.48263forward
CNT30313529Triticum urartuCamelina sativa16.7721.9884.1582forward
CNT3077678Triticum urartuBrassica juncea24.5419.5881.67120forward
CNT30264666Triticum urartuBrassica rapa24.5413.6181.67120forward
CNT30611481Triticum urartuArabis alpina24.3414.684.87119forward
CNT30474763Triticum urartuSaccharum spontaneum52.9729.6390.73259forward
CNT30140296Triticum urartuLolium perenne53.7827.1196.58263forward
CNT30649241Triticum urartuRosa chinensis26.3811.3481.4129forward
CNT30350310Triticum urartuEragrostis tef52.9737.6590.73259forward
CNT30595666Triticum urartuOryza meridionalis50.119.6690.2245forward
CNT30573352Triticum urartuVitis vinifera39.0629.2979.06191forward
CNT3055927Triticum urartuAmborella trichopoda24.5427.7187.5120forward
CNT30150205Triticum urartuBrachypodium distachyon49.0857.1494.17240forward
CNT30583070Triticum urartuEchinochloa crusgalli53.3723.2890.04261forward
CNT30497204Triticum urartuDigitaria exilis35.7932.7188.57175forward
CNT30115627Triticum urartuOryza nivara27.27.7789.47133forward
CNT30557361Triticum urartuPanicum hallii59.9253.0889.76293forward
CNT30725730Triticum urartuLupinus angustifolius23.1116.8782.3113forward

Expression of CNT30687021

Peptides detected in this lncRNA

>peptide 1 (63 aa)
CNALIFIARYKYYKHARSTRTNLHFTPTLAYIPLARSRFPRRRVPCTGRRCSDRIGSISPSGT*

>peptide 2 (55 aa)
MHAARVQIYILHPPSHIYLSHAHVSHDDGYHAQDDDARIGSDRFRLVELEAGGRS*

Sequence

>CNT30687021
TGCAATGCACTAATTTTCATAGCACGATATAAATATTACAAGCATGCACGCAGCACGCGTACAAATTTACATTTTACACCCACCCTCGCATATATACCTC
TCGCACGCTCACGTTTCCCACGACGACGGGTACCATGCACAGGACGACGATGCTCGGATCGGATCGGATCGATTTCGCCTAGTGGAACTTGAGGCTGGCG
GCCGTTCTTGATCTCCTTGAGCTTGAGCTCCTTCATCTCCTTCTCGCTCTTGGTGCCGAACCCGAGCGGGTTGAAGATGGGCCCGCCGGGGTAGGCGGGG
TCGCCGGAGCCACCGAGGTACTTCTCGAGGCCCAGGAAGTACTGCTTCCCCATGGAGCCCGGGTTGTACCAGTCCTGGAGCCGCCGGTGCTCCGCGAAGC
CGATGAGCGCCATCTCGAACACGAAGAGCGTGTAGGGGTCGGCCCAGTACTGGTAGGTGAGGGACTGCTTGGACGCAAACCACAGCTGC