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Detailed information on CNT30608086


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 2e-53

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30372056Gossypium raimondiiArabidopsis thaliana54.9935.0280.47215forward
CNT30281438Gossypium raimondiiChenopodium quinoa35.8112.3582.14140forward
CNT30379782Gossypium raimondiiManihot esculenta55.7534.4481.19218forward
CNT30405509Gossypium raimondiiBeta vulgaris56.279.1284.55220forward
CNT30526207Gossypium raimondiiPhaseolus vulgaris37.3412.6889.73146forward
CNT30631224Gossypium raimondiiVigna unguiculata56.2726.9984.09220forward
CNT30711417Gossypium raimondiiGlycine max37.348.1688.36146forward
CNT3045175Gossypium raimondiiPrunus dulcis23.0219.6588.8990forward
CNT3085597Gossypium raimondiiVigna radiata56.2715.9485220forward
CNT30543418Gossypium raimondiiBrassica napus54.9928.5983.72215forward
CNT30233604Gossypium raimondiiBrassica oleracea54.9932.7282.79215forward
CNT30145875Gossypium raimondiiMedicago truncatula37.348.8686.3146forward
CNT30311401Gossypium raimondiiCamelina sativa54.9927.2580.93215forward
CNT3082028Gossypium raimondiiBrassica juncea55.528.2284.33217forward
CNT30259451Gossypium raimondiiBrassica rapa54.9929.4983.72215forward
CNT30611481Gossypium raimondiiArabis alpina50.1324.0582.14196forward
CNT30649241Gossypium raimondiiRosa chinensis50.1317.2281.12196forward
CNT30718929Gossypium raimondiiMalus domestica golden23.279.8187.9191forward
CNT30624860Gossypium raimondiiDaucus carota21.999.9787.2186forward
CNT30621314Gossypium raimondiiCajanus cajan55.517.2185.25217forward
CNT30573352Gossypium raimondiiVitis vinifera56.2733.7483.64220forward
CNT3027741Gossypium raimondiiTheobroma cacao43.9939.3687.21172forward
CNT30329767Gossypium raimondiiDioscorea rotundata38.6224.6782.78151forward

Expression of CNT30608086

Peptides detected in this lncRNA

>peptide 1 (31 aa)
YTCHEPLYEVTQDCQHCQSPILHFFQLQILQ*

>peptide 2 (34 aa)
MPAHQTLQVPSRTQTKCKGLPNSCMFLLVGSHRF*

Sequence

>CNT30608086
CCTACACCTGTCACGAGCCCTTGTATGAAGTAACCCAAGATTGCCAACATTGCCAATCTCCCATTCTTCACTTCTTTCAGCTTCAAATCCTTCAATGACT
TCTCATCTTTCCCAAAACCAAGTGGGTTAAACAGTGGTCCTCCAGGGTATGCCGGCTCACCAGACCCTCCAAGTGCCATCTCGAACACAAACAAAGTGTA
AGGGTCTGCCCAATAGCTGTATGTTCCTGCTGGTGGGATCACACCGGTTCTAAACCAAGGGAGGGCTGTTTCTGCTGGGATAAGACCGGCCTTCCCAAGT
ATTTCAGGGGCAATCGCACCTACTGCACCCAACATAGCATAACGCCCGTTGATGATCTCACCGTAGGCTAGCCATTTAGGCTCGATGAACC