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Detailed information on CNT30329767


BLAST search results

BLAST vs Swiss-Prot:
sp|P27522|CB13_SOLLC, E-value = 2e-71

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30379782Dioscorea rotundataManihot esculenta43.9542.580.67269forward
CNT30405509Dioscorea rotundataBeta vulgaris24.356.1883.22149forward
CNT30526207Dioscorea rotundataPhaseolus vulgaris63.2433.6280.62387forward
CNT30631224Dioscorea rotundataVigna unguiculata49.3537.0679.8302forward
CNT30486017Dioscorea rotundataOlea europaea31.3719.4179.17192forward
CNT30711417Dioscorea rotundataGlycine max54.5818.6678.74334forward
CNT3045175Dioscorea rotundataPrunus dulcis44.4459.3979.04272forward
CNT3085597Dioscorea rotundataVigna radiata63.428.1279.64388forward
CNT30540897Dioscorea rotundataBrassica napus37.7527.981.39231forward
CNT30238548Dioscorea rotundataBrassica oleracea43.6331.6780.15267forward
CNT30145920Dioscorea rotundataMedicago truncatula55.2344.4779.29338forward
CNT30313529Dioscorea rotundataCamelina sativa21.0834.5886.05129forward
CNT3060116Dioscorea rotundataArabidopsis lyrata33.3342.6880.88204forward
CNT3077678Dioscorea rotundataBrassica juncea20.9220.8884.38128forward
CNT30264123Dioscorea rotundataBrassica rapa37.7525.3381.39231forward
CNT30611624Dioscorea rotundataArabis alpina36.622.281.7224forward
CNT30597278Dioscorea rotundataFraxinus excelsior44.9354.5678.55275forward
CNT30608086Dioscorea rotundataGossypium raimondii24.6738.6282.78151forward
CNT30649241Dioscorea rotundataRosa chinensis44.4423.978.68272forward
CNT30210187Dioscorea rotundataHelianthus annuus23.3717.4881.82143forward
CNT30718929Dioscorea rotundataMalus domestica golden29.7419.6182.97182forward
CNT30625265Dioscorea rotundataDaucus carota43.329.6880.38265forward
CNT30479074Dioscorea rotundataArabidopsis halleri30.3932.2480.65186forward
CNT30359247Dioscorea rotundataLactuca sativa53.7639.0780.24329forward
CNT30422640Dioscorea rotundataPapaver somniferum34.4851.5982.94211forward
CNT30573352Dioscorea rotundataVitis vinifera41.0138.580.88251forward
CNT3055927Dioscorea rotundataAmborella trichopoda16.8323.7983.5103forward
CNT30118654Dioscorea rotundataCitrus clementina37.0942.1983.26227forward
CNT3037927Dioscorea rotundataCucumis melo18.9524.2783.62116forward
CNT30725700Dioscorea rotundataLupinus angustifolius54.4137.2178.98333forward

Expression of CNT30329767

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MQRYKDKDYMNIHIHSDITNTDDDDDEEVEEEEEEEED*

>peptide 2 (60 aa)
MQDPQNLPSTSQIPRSTASPLNLGYTSLEISGARQSPSKPFQRQTMYNCLPSNYRFRPGG*

>peptide 3 (69 aa)
MKYPKIASMASLPFFTSFSFNSFIDFSSFPSPSGLNKGPPGYAGSPEPPKYFSNPKKYCFPIEPGLYQS*

Sequence

>CNT30329767
CTCAAATGAGAATAATATTATAATTAAATGCAAAGATACAAAGACAAAGATTACATGAACATACACATACATTCAGATATTACAAACACTGATGATGATG
ATGATGAAGAAGTAGAAGAAGAGGAAGAAGAAGAAGAAGATTGATATCAGAAACCCTAATCCTAACCCTATTAATGGAACTTGAGACTGGTCAAGACATT
GTTGTTGATTGGGTCAGCCAAATGGTCCAAGAGCTTGAATGAAATACCCCAAGATTGCAAGCATGGCAAGTCTTCCATTCTTCACCTCCTTCAGCTTCAA
CTCTTTCATAGACTTCTCATCTTTTCCAAGCCCTAGTGGATTAAACAAAGGTCCTCCAGGGTATGCAGGATCCCCAGAACCTCCCAAGTACTTCTCAAAT
CCCAAGAAGTACTGCTTCCCCATTGAACCTGGGTTATACCAGTCTTGAAATCTCCGGTGCTCGGCAAAGCCCATCAAAGCCATTTCAAAGACAAACAATG
TATAATTGTCTGCCCAGTAATTATAGGTTCCGGCCGGGGGGATGACACCGGTCTTGAACCAAGGTAAAGCCGTCTCCGGCGGTATAAGACCAGCTTGGCC
CAAGATTTCCGG