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Detailed information on CNT30442289


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 2e-64

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691521Aegilops tauschiiOryza sativa22.4748.4688.73142forward
CNT30673928Aegilops tauschiiSetaria viridis25.4744.2390.06161forward
CNT30405509Aegilops tauschiiBeta vulgaris23.266.0981.63147forward
CNT3045167Aegilops tauschiiPrunus dulcis28.851.5680.77182forward
CNT30125939Aegilops tauschiiPhyscomitrium patens28.4853.8980180forward
CNT30649241Aegilops tauschiiRosa chinensis20.4111.3482.17129forward
CNT30687021Aegilops tauschiiTriticum urartu41.6153.7898.48263forward
CNT30350310Aegilops tauschiiEragrostis tef57.9153.287.43366forward
CNT30573352Aegilops tauschiiVitis vinifera30.2229.2979.58191forward
CNT3055927Aegilops tauschiiAmborella trichopoda19.1527.9486.78121forward
CNT30150205Aegilops tauschiiBrachypodium distachyon51.978.194.51328forward
CNT30497204Aegilops tauschiiDigitaria exilis30.8536.4589.23195forward

Expression of CNT30442289

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MGRPSTGRCPPAGSRLPGTTGSPSPGAPGPPCPGPPGRSCPPPPS

>peptide 2 (45 aa)
MACRDMPRKASMARRPFLISLSLSSFISFSLLVPNPSGLKMGPPG*

>peptide 3 (59 aa)
IFVARYKYYKHARSTRTNLHFTPTLAYIPLARSRFPRRRVPCTGRRCSDRIGSISPSGT*

>peptide 4 (34 aa)
MEPGLYQSWSRRCSAKPMSAISNTKSVYGSAQYW*

>peptide 5 (60 aa)
MHAARVQIYILHPPSHIYLSHAHVSHDDGYHAQDDDARIGSDRFRLVELEAGEDVVVDGV*

Sequence

>CNT30442289
AATTTTCGTAGCACGATATAAATATTACAAGCATGCACGCAGCACGCGTACAAATTTACATTTTACACCCACCCTCGCATATATACCTCTCGCACGCTCA
CGTTTCCCACGACGACGGGTACCATGCACAGGACGACGATGCTCGGATCGGATCGGATCGATTTCGCCTAGTGGAACTTGAGGCTGGTGAGGATGTTGTT
GTTGACGGGGTCTGAGAGATGGCCTGCAGGGACATGCCGAGGAAGGCGAGCATGGCGAGGCGGCCGTTCTTGATCTCCTTGAGCTTGAGCTCCTTCATCT
CCTTCTCGCTCTTGGTCCCGAACCCGAGCGGGTTGAAGATGGGCCCGCCGGGGTAGGCGGGGTCGCCGGAGCCGCCGAGGTACTTCTCAAGGCCCAGGAA
GTACTGCTTCCCCATGGAGCCCGGGTTGTACCAGTCCTGGAGCCGCCGGTGCTCCGCGAAGCCGATGAGCGCCATCTCGAACACGAAGAGCGTGTATGGG
TCGGCCCAGTACTGGTAGGTGCCCGCCGGCGGGATCGCGCCTGCCTGGAACCACGGGATCGCCGTCTCCGGGGGCACCAGGCCCACCTTGCCCAGGGCCT
CCGGGGCGATCATGCCCACCACCCCCATCATC