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Detailed information on CNT30238557


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 2e-92

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30372056Brassica oleraceaArabidopsis thaliana64.8469.3891.55426forward
CNT30379782Brassica oleraceaManihot esculenta67.8870.4678.7446forward
CNT30405509Brassica oleraceaBeta vulgaris51.1413.9382.74336forward
CNT30526207Brassica oleraceaPhaseolus vulgaris48.2527.5480.76317forward
CNT3045167Brassica oleraceaPrunus dulcis36.8368.5680.17242forward
CNT30540898Brassica oleraceaBrassica napus84.0299.2898.37552forward
CNT30173586Brassica oleraceaTrifolium pratense30.5921.0381.09201forward
CNT30145875Brassica oleraceaMedicago truncatula59.6723.7981.63392forward
CNT3060116Brassica oleraceaArabidopsis lyrata49.1667.5790.09323forward
CNT3077678Brassica oleraceaBrassica juncea91.0297.5597.83598forward
CNT30264072Brassica oleraceaBrassica rapa71.8498.5498.52472forward
CNT30611624Brassica oleraceaArabis alpina68.0444.392.84447forward
CNT30597278Brassica oleraceaFraxinus excelsior62.8681.9477.48413forward
CNT30649241Brassica oleraceaRosa chinensis48.427.9480.19318forward
CNT30625265Brassica oleraceaDaucus carota49.6236.5182.21326forward
CNT30359247Brassica oleraceaLactuca sativa40.9431.9582.53269forward
CNT30573352Brassica oleraceaVitis vinifera47.6448.0181.79313forward
CNT3027741Brassica oleraceaTheobroma cacao29.3844.1679.27193forward
CNT30118713Brassica oleraceaCitrus clementina69.5675.9179.87457forward
CNT3038106Brassica oleraceaCucumis melo15.8320.9782.69104forward
CNT3048728Brassica oleraceaCucumis sativus14.9225.7283.6798forward

Expression of CNT30238557

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MSLQVESHRFGTKEGQCLLESNQLCQESQGQ*

Sequence

>CNT30238557
AATCTTTTAAATATGTAACTGACTTCCTTGGTTATTGGAAAACCCAACTATTAATCCTCGAAGTTTTTCTTTTTGGCCATTGACATTTTCATATCTTACA
AAGATATAATATGTTTACAAAGGGTGTTACAATACGAAGACTGTAGGATACAAGAGAATGAGAGTCCAACATAAAACACATGGGATGATATGAAGATCAT
CTCAGTGGAACTTGAGTTTCAACTCCTTCATTGACTTCTCGTCTTTCCCAAACCCAAGAGGGTTAAAGAAAGGTCCACCGGGGTAAGACGGGTCACCCGA
ACCGGCAAAACCTTTCTCTAAGCCCAAGAAGTACTGTTTGCCCATTGATCCTGGGTTGTACCAATCCTGCAACCTCCGGTGCTCAGCAAATCCCATCAAA
GCCATCTCGAGAACAAAGAGTGTGTAAGGGTCTGCCCAGTAGCTGTATGTCCCTGCAGGTGGAATCACACCGGTTTGGAACCAAGGAAGGGCAGTGTCTG
CTGGAATCAAACCAGCTTTGCCAAGAATCTCAGGGGCAATAGCTCCAGCTGCACCTAACATAGCGAACCTTCCGTTGATGATCTCTCCGTAGGCTAACCA
TCTTGGCTCGATGAAACCTCCAGTACCTTCTGGGTCTGACAGACCAAGCGGGTCGAA