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Detailed information on CNT30359331


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 5e-110

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30379782Lactuca sativaManihot esculenta25.6434.9178.73221forward
CNT30405509Lactuca sativaBeta vulgaris21.117.5582.97182forward
CNT3045175Lactuca sativaPrunus dulcis15.3128.8281.06132forward
CNT30173588Lactuca sativaTrifolium pratense25.2921.8281.19218forward
CNT30311401Lactuca sativaCamelina sativa27.4930.0481.01237forward
CNT3059858Lactuca sativaArabidopsis lyrata22.3933.6882.38193forward
CNT30474763Lactuca sativaSaccharum spontaneum26.4526.0982.89228forward
CNT30607765Lactuca sativaGossypium raimondii24.1331.0985.58208forward
CNT30217954Lactuca sativaKalanchoe fedtschenkoi14.534.7283.2125forward
CNT30649241Lactuca sativaRosa chinensis29.9322.6782.95258forward
CNT30210187Lactuca sativaHelianthus annuus31.5533.2589.34272forward
CNT30340471Lactuca sativaEragrostis tef28.0730.9980.58242forward
CNT30479074Lactuca sativaArabidopsis halleri22.3933.4582.9193forward
CNT30368762Lactuca sativaSorghum bicolor22.8539.0181.73197forward
CNT30621314Lactuca sativaCajanus cajan24.0116.4281.16207forward
CNT3027741Lactuca sativaTheobroma cacao29.1257.4479.28251forward
CNT30118654Lactuca sativaCitrus clementina19.7231.685.29170forward
CNT3037927Lactuca sativaCucumis melo27.2649.1682.13235forward
CNT30583045Lactuca sativaEchinochloa crusgalli22.8525.4980.71197forward
CNT30557526Lactuca sativaPanicum hallii21.1119.9682.97182forward

Expression of CNT30359331

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MESLVELEASQDIVVDRISQMVQQVLERSNPGHQTLNEVTQDC*

>peptide 2 (72 aa)
MTPVLNQGRAVSGGMSPSLPKISGAMAPAAPNMAKRPLITSPYASHLGSMNPPVPSGSERPSGSNPKSPGRL*

Sequence

>CNT30359331
GCAACAAGGTTTCCGTTATATATCATTAATTTTGTTACAAATTAATAATAGTATTCCGAAGAAATAGATCGATCTGCACATGATATTACATATGATGTAG
GAAAGAAAATGGAGAGTCTAGTGGAACTTGAGGCTAGTCAAGACATTGTTGTTGACAGGATCAGCCAAATGGTCCAGCAGGTTCTCGAAAGGTCCAACCC
CGGTCACCAAACCCTGAATGAAGTAACCCAAGATTGCTAACATAGCCAATCTTCCATTCTTGATTTCTTTTAGCTTCAGTTCCTTCATTGACTTCTCATC
TTTCCCGAACCCGAGTGGGTTAAAGAACGGCCCACCTGGGTATGCCGGGTCACCCGACCCTGAAAAACCTTTCTCCAACCCCAAGAAGGTGAAAGGGTCT
GCCCAGTAGTTGTATGTTCCGGCTGGGGGAATGACACCGGTCTTGAACCAAGGGAGGGCGGTTTCCGGTGGGATGAGCCCAAGCTTGCCGAAGATCTCTG
GTGCAATGGCGCCAGCTGCACCCAACATGGCGAAACGTCCATTGATAACCTCGCCGTATGCTAGCCACTTGGGTTCGATGAATCCTCCGGTTCCTTCTGG
GTCCGAGAGACCAAGTGGGTCGAACCCAAAGTCGCCTGGGAGACTGTAAAATTCAAAGTCTCAGTAATATATAGGAGAAAAGGGTACCTTAACAGGAGGG
GTGGAAGCAGCTTTGACAACAAAGGAGACCTTTCTTGAAGATGTTGTGTGAAGTGGCCTGGCTGCTAGGATTTGCCTAGCAGACTCCACGGAGGAGGTGA
GCGAAGACGATGAGACCAAAGCCTGTGTAGCCATTTTCCTTGAGAAGATTAGATGATCGTGT