Detailed information on CNT30264551


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 6e-96

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30372056Brassica rapaArabidopsis thaliana57.8572.6491.93446forward
CNT30405509Brassica rapaBeta vulgaris43.5813.9381.85336forward
CNT30526207Brassica rapaPhaseolus vulgaris59.0139.5379.78455forward
CNT30540898Brassica rapaBrassica napus53.9674.82100416forward
CNT30145875Brassica rapaMedicago truncatula57.4626.8881.26443forward
CNT3077678Brassica rapaBrassica juncea58.8874.06100454forward
CNT30611624Brassica rapaArabis alpina59.445.3992.79458forward
CNT30597278Brassica rapaFraxinus excelsior53.1881.3577.56410forward
CNT30649241Brassica rapaRosa chinensis44.7530.3280.29345forward
CNT30625265Brassica rapaDaucus carota46.1739.8782.58356forward
CNT30359247Brassica rapaLactuca sativa48.3844.380.43373forward

Expression of CNT30264551

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MKIISVELEAGQDIVVDWIRQMIKKVLVWPHTVSTPSLTSRLSQTQEG*

Sequence

>CNT30264551
CACCACAGGCAAATATTCGACAATAATCTTTTAAATATGTAACTGACTTCCTTGGTGATTGGAAAACCCAACTATTAATCCTAGAAGTTGTTCTTTTTGG
CCATTGACATTTTCATATCTTACAAAGATATAATATGTTTACAAAGGGTGGTACAATACGAAGACTGTAGGATACAAGAGAATGAGAGTCCAACATAAAA
CACATGGGATGATATGAAGATCATCTCAGTGGAACTTGAGGCTGGTCAGGACATTGTTGTTGACTGGATCCGCCAAATGATCAAGAAGGTTCTGGTATGG
CCCCACACCGTTTCAACTCCTTCATTGACTTCTCGTCTTTCCCAAACCCAAGAGGGTTAAAGAAAGGTCCCCCGGGGTAAGACGGGTCACCCGAACCGGC
AAAACCTTTCTCTAAGCCCAAGAAGTACTGTTTGCCCATTGATCCTGGGTTGTACCAGTCCTGCAACCTCCGGTGCTCAGCAAATCCCATCAAAGCCATC
TCGAGAACAAAGAGTGTGTAAGGGTCTGCCCAGTAGCTGTACGTCCCTGCAGGTGGAATCACACCGGTTTGGAACCAAGGAAGGGCAGTGTCTGCTGGAA
TCAAACCAGCTTTGCCAAGAATCTCAGGGGCAATAGCTCCAGCTGCACCCAACATAGCGAACCGTCCGTTGATGATCTCTCCGTAGGCTAACCATCTCGG
TTCGATGAATCCTCCAGTACCCTCTGGGTCTGAAAGACCAAGAGGGTCGAATCCATAGTCGCCAGGTAAGC