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Detailed information on CNT3059858


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 4e-87

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691521Arabidopsis lyrataOryza sativa11.3422.1889.2365forward
CNT30673615Arabidopsis lyrataSetaria viridis29.3235.7484.52168forward
CNT30379782Arabidopsis lyrataManihot esculenta57.4251.9778.72329forward
CNT30405509Arabidopsis lyrataBeta vulgaris94.7622.5178.64543forward
CNT30526207Arabidopsis lyrataPhaseolus vulgaris49.3924.5980.92283forward
CNT30631052Arabidopsis lyrataVigna unguiculata40.4929.5581.9232forward
CNT30486017Arabidopsis lyrataOlea europaea33.6819.5180.83193forward
CNT30708457Arabidopsis lyrataGlycine max75.2264.7180.74431forward
CNT3085597Arabidopsis lyrataVigna radiata57.0723.781.96327forward
CNT30543413Arabidopsis lyrataBrassica napus96.1691.5390.38551forward
CNT30233607Arabidopsis lyrataBrassica oleracea94.2468.6190.37540forward
CNT30173586Arabidopsis lyrataTrifolium pratense38.0522.882.57218forward
CNT30145920Arabidopsis lyrataMedicago truncatula43.4632.7684.34249forward
CNT30311401Arabidopsis lyrataCamelina sativa99.372.1294.73569forward
CNT3082235Arabidopsis lyrataBrassica juncea94.2471.1591.48540forward
CNT30259451Arabidopsis lyrataBrassica rapa91.9772.2991.08527forward
CNT30611432Arabidopsis lyrataArabis alpina97.9159.4386.63561forward
CNT30597278Arabidopsis lyrataFraxinus excelsior21.4724.482.11123forward
CNT30475143Arabidopsis lyrataSaccharum spontaneum26.8820.2185.06154forward
CNT30607765Arabidopsis lyrataGossypium raimondii32.8128.183.51188forward
CNT30649241Arabidopsis lyrataRosa chinensis35.0817.6681.09201forward
CNT30210187Arabidopsis lyrataHelianthus annuus92.3264.6781.47529forward
CNT30625164Arabidopsis lyrataDaucus carota53.7526.682.14308forward
CNT30350309Arabidopsis lyrataEragrostis tef26.8826.4685.06154forward
CNT30479074Arabidopsis lyrataArabidopsis halleri98.9598.2797.35567forward
CNT30368340Arabidopsis lyrataSorghum bicolor26.8834.0783.77154forward
CNT30621314Arabidopsis lyrataCajanus cajan94.2442.8279.81540forward
CNT30359331Arabidopsis lyrataLactuca sativa33.6822.3982.38193forward
CNT30573352Arabidopsis lyrataVitis vinifera56.0249.2381.62321forward
CNT3027741Arabidopsis lyrataTheobroma cacao31.0640.7382.58178forward
CNT30118713Arabidopsis lyrataCitrus clementina51.3148.8482.31294forward
CNT3037927Arabidopsis lyrataCucumis melo34.214179.08196forward
CNT30583045Arabidopsis lyrataEchinochloa crusgalli29.3221.7383.93168forward
CNT30557458Arabidopsis lyrataPanicum hallii29.3233.685.71168forward
CNT30725175Arabidopsis lyrataLupinus angustifolius37.728.6982.87216forward
CNT3048728Arabidopsis lyrataCucumis sativus20.2430.4582.76116forward

Expression of CNT3059858

Peptides detected in this lncRNA

>peptide 1 (44 aa)
VRYKRHKTHRMMITSVELEAGQDVVVDGISQVIEQVLVRSHTGH*

>peptide 2 (33 aa)
MANRPLMISPYASHLGSMNPPVPSGSERPSGSNP

>peptide 3 (33 aa)
MASIASLPFLTSLSFNSFKDFSSFPNPRGTVFP*

>peptide 4 (31 aa)
MSLLVESHRFGTKEEQSLVESDQPFLESQEQ*

Sequence

>CNT3059858
GTACGATACAAGAGACATAAAACACATAGGATGATGATCACCTCAGTGGAACTTGAGGCTGGTCAAGACGTTGTTGTTGACGGGATCAGCCAAGTGATCG
AGCAGGTTCTGGTAAGGTCCCACACCGGTCACTAGTCCTTGGATAAAGTAACCGAGGATGGCGAGCATAGCCAGTCTACCGTTCTTGACCTCCTTGAGTT
TCAACTCCTTCAAGGACTTCTCATCTTTCCCAAACCCTAGAGGTACTGTTTTCCCATAGATCCTGGGTTGTACCAGTCTTGTAACCTCCGGTGCTCAGCG
AATCCCATCAGAGCCATCTCGAGAACAAAGAGAGTGTAATTGTCTGCCCAGTAAGTGTATGTCCCTGCTGGTGGAATCACACCGGTTTGGAACCAAGGAA
GAGCAGTCTCTGGTGGAATCAGACCAGCCTTTCCTAGAATCTCAGGAGCAATAGCTCCAGCTGCACCCAACATGGCAAACCGTCCGTTGATGATCTCTCC
GTATGCTAGCCATCTTGGCTCAATGAACCCTCCAGTTCCCTCTGGGTCTGAAAGACCAAGTGGGTCAAATCCA