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Detailed information on CNT30397679


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 3e-39

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691521Triticum turgidumOryza sativa34.8933.1186.697forward
CNT30674207Triticum turgidumSetaria viridis32.0122.5989.8989forward
CNT30405509Triticum turgidumBeta vulgaris41.014.7381.58114forward
CNT30125939Triticum turgidumPhyscomitrium patens23.3819.4687.6965forward
CNT30303678Triticum turgidumTriticum aestivum53.9622.5298150forward
CNT30233604Triticum turgidumBrassica oleracea23.389.8986.1565forward
CNT30441906Triticum turgidumAegilops tauschii10037.2298.56278forward
CNT30611481Triticum turgidumArabis alpina32.0110.9285.3989forward
CNT30476581Triticum turgidumSaccharum spontaneum51.0816.1488.03142forward
CNT30140296Triticum turgidumLolium perenne52.1614.9595.17145forward
CNT30624860Triticum turgidumDaucus carota26.628.5785.1474forward
CNT30687021Triticum turgidumTriticum urartu38.4921.88100107forward
CNT30350305Triticum turgidumEragrostis tef51.0817.2190.14142forward
CNT30368762Triticum turgidumSorghum bicolor23.3812.8793.8565forward
CNT30595683Triticum turgidumOryza meridionalis42.819.1891.6119forward
CNT30369533Triticum turgidumOryza glumipatula42.8121.2991.6119forward
CNT3055927Triticum turgidumAmborella trichopoda38.8524.9487.96108forward
CNT30150205Triticum turgidumBrachypodium distachyon30.222094.0584forward
CNT30575228Triticum turgidumOryza barthii42.819.3991.6119forward
CNT30583045Triticum turgidumEchinochloa crusgalli51.0818.3788.73142forward
CNT30115627Triticum turgidumOryza nivara53.968.7686.67150forward
CNT30557430Triticum turgidumPanicum hallii43.5313.7890.08121forward

Expression of CNT30397679

Peptides detected in this lncRNA

>peptide 1 (66 aa)
GARVVPVLEPPVLREADERHLEHEERVGVGPVLVGARWRDRAGLEPRDRRPPGRSCPPRPSSPSGR*

Sequence

>CNT30397679
TGGAGCCCGGGTTGTACCAGTCCTGGAGCCGCCGGTGCTCCGCGAAGCCGATGAGCGCCATCTCGAACACGAAGAGCGTGTAGGGGTCGGCCCAGTACTG
GTAGGTGCCCGCTGGCGGGATCGCGCCGGCCTGGAACCACGGGATCGCCGGCCTCCGGGGCGATCATGCCCACCACGCCCATCATCGCCGTCCGGCCGTT
GAAGATCTCGCCGTAGGCCAGCCACCTGGGCTCGATGAACCCGCCGGTGCCCTCCGGGTCGGACAGCCCCAAGGGGTC