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Detailed information on CNT30311401


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 5e-101

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691521Camelina sativaOryza sativa8.2422.1889.2365forward
CNT30673615Camelina sativaSetaria viridis21.4235.9683.43169forward
CNT30372056Camelina sativaArabidopsis thaliana44.9957.8295.21355forward
CNT30379782Camelina sativaManihot esculenta37.947.2480.27299forward
CNT30405509Camelina sativaBeta vulgaris69.222.6478.39546forward
CNT30526207Camelina sativaPhaseolus vulgaris37.2625.5480.61294forward
CNT30631052Camelina sativaVigna unguiculata30.4230.5782.5240forward
CNT30486017Camelina sativaOlea europaea24.4619.5179.79193forward
CNT30708457Camelina sativaGlycine max54.6364.7179.12431forward
CNT3085597Camelina sativaVigna radiata43.624.9381.4344forward
CNT30540204Camelina sativaBrassica napus70.2299.8292.6554forward
CNT30233607Camelina sativaBrassica oleracea69.0769.2592.66545forward
CNT30173586Camelina sativaTrifolium pratense29.2824.1681.39231forward
CNT30145920Camelina sativaMedicago truncatula32.5733.8284.05257forward
CNT3059858Camelina sativaArabidopsis lyrata72.1299.394.73569forward
CNT3082235Camelina sativaBrassica juncea70.4773.2592.81556forward
CNT30259451Camelina sativaBrassica rapa70.4776.2792.27556forward
CNT30611432Camelina sativaArabis alpina72.6260.788.31573forward
CNT30597278Camelina sativaFraxinus excelsior43.9868.8577.52347forward
CNT30475143Camelina sativaSaccharum spontaneum19.5220.2183.12154forward
CNT30608086Camelina sativaGossypium raimondii27.2554.9980.93215forward
CNT30649241Camelina sativaRosa chinensis36.8825.5779.38291forward
CNT30210187Camelina sativaHelianthus annuus68.0665.6581.19537forward
CNT30625265Camelina sativaDaucus carota43.9838.8681.56347forward
CNT30350304Camelina sativaEragrostis tef39.9239.8779.68315forward
CNT30479074Camelina sativaArabidopsis halleri73.1310094.28577forward
CNT30368340Camelina sativaSorghum bicolor19.5234.0782.47154forward
CNT30621314Camelina sativaCajanus cajan70.2243.9379.06554forward
CNT30359331Camelina sativaLactuca sativa30.0427.4981.01237forward
CNT30573352Camelina sativaVitis vinifera42.9751.9980.53339forward
CNT3027741Camelina sativaTheobroma cacao29.6653.5580.77234forward
CNT30118713Camelina sativaCitrus clementina35.8747.0181.63283forward
CNT30329871Camelina sativaDioscorea rotundata10.1421.628580forward
CNT30583045Camelina sativaEchinochloa crusgalli21.4221.8683.43169forward
CNT30557569Camelina sativaPanicum hallii33.5925.5881.13265forward
CNT30725154Camelina sativaLupinus angustifolius43.9857.8379.54347forward

Expression of CNT30311401

Peptides detected in this lncRNA

>peptide 1 (45 aa)
TSFQSSCTICTRTRCNKFKKTIAAGIVSLSLSVLLGSAVFGFMRF*

>peptide 2 (34 aa)
MANRPLMISPYASHLGSMNPPVPSGSERPSGSNP*

>peptide 3 (31 aa)
MSLQVESHRFGTREEQSLLESDRPFLESQEQ*

>peptide 4 (64 aa)
MKHNGCYNTKKPMVTRDRKILRYKRHTTHRMMITSVELEAGQDVVVDGIRQVIKQVLVRPHSGH*

Sequence

>CNT30311401
GAACTTCTTTTCAGTCGTCTTGCACAATCTGCACTAGGACTAGGTGTAATAAGTTCAAGAAAACCATTGCTGCTGGTATTGTGAGCCTTTCTCTATCTGT
TCTACTGGGTTCTGCTGTGTTTGGTTTCATGAGATTCTGAATGAAACATAATGGGTGTTACAATACGAAGAAGCCAATGGTAACAAGAGACAGGAAGATT
TTAAGATACAAGAGACATACAACACATAGGATGATGATCACCTCAGTGGAACTTGAGGCTGGTCAAGACGTTGTTGTTGACGGGATCCGCCAAGTGATCA
AGCAGGTTCTGGTAAGGCCCCACTCCGGTCACTAGTCCTTGGATAAAGTAACCGAGGATAGCGAGCATAGCTAGTCTACCGTTCTTGACCTCCTTGAGTT
TCAACTCCTTCATTGACTTCTCATCTTTCCCAAACCCAAGAGGTACTGTTTCCCCATAGATCCTGGGTTGTACCAGTCCTGTAGCCTCCGGTGCTCAGCA
AAGCCCATCAAAGCCATCTCGAGAACAAAGAGTGTGTAATTGTCTGCCCAGTAGTTGTATGTCCCTGCAGGTGGAATCACACCGGTTTGGAACCAGGGAA
GAGCAGTCTCTGCTGGAATCAGACCGGCCTTTCCTAGAATCTCAGGAGCAATAGCTCCAGCTGCACCCAACATGGCGAACCGTCCGTTGATGATCTCTCC
GTACGCTAGCCATCTCGGCTCAATGAATCCTCCGGTACCCTCTGGGTCTGAAAGACCAAGTGGGTCGAATCCATAGTCACCAGGTAAGC