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Detailed information on CNT30303678


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 2e-74

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691521Triticum aestivumOryza sativa21.3248.4688.73142forward
CNT30673928Triticum aestivumSetaria viridis17.2731.5988.7115forward
CNT30405509Triticum aestivumBeta vulgaris22.076.0981.63147forward
CNT3045167Triticum aestivumPrunus dulcis27.3351.5680.77182forward
CNT30125939Triticum aestivumPhyscomitrium patens27.0353.8980180forward
CNT30397679Triticum aestivumTriticum turgidum22.5253.9698150forward
CNT30540898Triticum aestivumBrassica napus18.0221.5881.67120forward
CNT30441906Triticum aestivumAegilops tauschii81.5372.6995.95543forward
CNT30313529Triticum aestivumCamelina sativa12.3121.9884.1582forward
CNT30264072Triticum aestivumBrassica rapa18.0225.0581.67120forward
CNT30474763Triticum aestivumSaccharum spontaneum43.3933.0788.24289forward
CNT30140296Triticum aestivumLolium perenne56.6138.8795.23377forward
CNT30687021Triticum aestivumTriticum urartu70.5796.1194.68470forward
CNT30350310Triticum aestivumEragrostis tef43.9942.5988.05293forward
CNT30595666Triticum aestivumOryza meridionalis54.228.9787.53361forward
CNT30573352Triticum aestivumVitis vinifera28.6829.2979.58191forward
CNT3055927Triticum aestivumAmborella trichopoda18.1727.9486.78121forward
CNT30150205Triticum aestivumBrachypodium distachyon29.7347.1494.95198forward
CNT30583144Triticum aestivumEchinochloa crusgalli43.2425.0788.54288forward
CNT30497204Triticum aestivumDigitaria exilis22.6728.2288.08151forward
CNT30557526Triticum aestivumPanicum hallii37.9927.7488.93253forward

Expression of CNT30303678

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MEPGLYQSWSRRCSAKPMSAISNTKSVYGSAQYW*

>peptide 2 (33 aa)
MLLLTGSERCLSSFISFSLLVPNPSGLKMGPPG*

>peptide 3 (31 aa)
MPTTPIIAVRPLKISPTAEASPAAASQREDPG

>peptide 4 (66 aa)
DERCNALIFVARYKYYKHARSTRTNLHFTPTLAYIPLARSRFPRRRVPCTGRRCSDRIGSISPSGT*

>peptide 5 (60 aa)
MHAARVQIYILHPPSHIYLSHAHVSHDDGYHAQDDDARIGSDRFRLVELEAGEDVVVDGV*

>peptide 6 (50 aa)
MGRPSTGRCPPAGSRLPGTTGSPSPGAPGPPCPGPPGRSCPPPPSSPSGR*

Sequence

>CNT30303678
GACGAGAGATGCAATGCACTAATTTTCGTAGCACGATATAAATATTACAAGCATGCACGCAGCACGCGTACAAATTTACATTTTACACCCACCCTCGCAT
ATATACCTCTCGCACGCTCACGTTTCCCACGACGACGGGTACCATGCACAGGACGACGATGCTCGGATCGGATCGGATCGATTTCGCCTAGTGGAACTTG
AGGCTGGTGAGGATGTTGTTGTTGACGGGGTCTGAGAGGTGCTTGAGCTCCTTCATCTCCTTCTCGCTCTTGGTCCCGAACCCGAGCGGGTTGAAGATGG
GCCCGCCGGGGTAGGCGGGGTCGCCGGAGCCGCCGAGGTACTTCTCAAGGCCCAGGAAGTACTGCTTCCCCATGGAGCCCGGGTTGTACCAGTCCTGGAG
CCGCCGGTGCTCCGCGAAGCCGATGAGCGCCATCTCGAACACGAAGAGCGTGTATGGGTCGGCCCAGTACTGGTAGGTGCCCGCCGGCGGGATCGCGCCT
GCCTGGAACCACGGGATCGCCGTCTCCGGGGGCACCAGGCCCACCTTGCCCAGGGCCTCCGGGGCGATCATGCCCACCACCCCCATCATCGCCGTCCGGC
CGTTGAAGATCTCGCCGACTGCAGAGGCCTCCCCAGCAGCTGCCTCCCAGAGAGAAGACCCTGGGC