Detailed information on CNT3048728


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30372056Cucumis sativusArabidopsis thaliana23.3614.583.1589forward
CNT30405509Cucumis sativusBeta vulgaris21.783.4484.3483forward
CNT30526207Cucumis sativusPhaseolus vulgaris34.3811.3880.92131forward
CNT30544167Cucumis sativusBrassica napus25.7218.9983.6798forward
CNT30238557Cucumis sativusBrassica oleracea25.7214.9283.6798forward
CNT30145920Cucumis sativusMedicago truncatula34.3817.2482.44131forward
CNT3059858Cucumis sativusArabidopsis lyrata30.4520.2482.76116forward
CNT3082028Cucumis sativusBrassica juncea2110.48580forward
CNT30259035Cucumis sativusBrassica rapa2117.2883.7580forward
CNT30611481Cucumis sativusArabis alpina28.0813.1382.24107forward
CNT30718929Cucumis sativusMalus domestica golden25.9810.6783.8499forward
CNT30625164Cucumis sativusDaucus carota32.8110.7981.6125forward
CNT30621314Cucumis sativusCajanus cajan49.3414.9179.26188forward
CNT30595683Cucumis sativusOryza meridionalis24.157.0983.792forward
CNT30369533Cucumis sativusOryza glumipatula24.1516.4683.792forward
CNT30573352Cucumis sativusVitis vinifera23.3613.6586.5289forward
CNT30118713Cucumis sativusCitrus clementina2113.2986.2580forward
CNT3037927Cucumis sativusCucumis melo44.8835.7798.25171forward
CNT30575228Cucumis sativusOryza barthii24.157.2683.792forward
CNT30725175Cucumis sativusLupinus angustifolius21.7811.0285.5483forward

Expression of CNT3048728

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MGGLFLVGLTPVIQRFLGLWLLLLPTLQTFR*

>peptide 2 (86 aa)
MTPVLNHGRAVSGGINPSDPKISGAMAPAAPNIANLPLITSPYANHLGSMNPPVPSGSDSPSGSNPKSPGRLNQNHQSNSNYHPVT*

Sequence

>CNT3048728
TTGTAGGTCCCTGCTGGTGGGATGACCCCTGTTTTGAACCATGGGAGGGCTGTTTCTGGTGGGATTAACCCCAGTGATCCAAAGATTTCTGGGGCTATGG
CTCCTGCTGCTCCCAACATTGCAAACCTTCCGTTGATCACTTCGCCGTATGCCAACCATCTTGGCTCGATGAACCCTCCTGTGCCTTCGGGATCAGATAG
CCCCAGTGGGTCAAACCCGAAATCGCCTGGCAGACTAAATCAAAACCACCAAAGTAATTCAAATTATCACCCAGTAACTTAGTTTAAATTTGTAGAAAAG
CTTTTTGACTTTAAGAAGATGGTTTATTTTAAACCTTTATTTGATAAGATTATTGTTACTTAGAATATGAAAAATAATAAG