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Detailed information on CNT3027741


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30372056Theobroma cacaoArabidopsis thaliana51.7236.8181.42226forward
CNT30379782Theobroma cacaoManihot esculenta34.123.5481.88149forward
CNT30405509Theobroma cacaoBeta vulgaris49.28.9179.53215forward
CNT30526207Theobroma cacaoPhaseolus vulgaris54.9220.8582.92240forward
CNT30631052Theobroma cacaoVigna unguiculata55.8431.0881.97244forward
CNT30486017Theobroma cacaoOlea europaea39.1317.2980.12171forward
CNT30711423Theobroma cacaoGlycine max55.8424.6784.02244forward
CNT3085597Theobroma cacaoVigna radiata55.8417.6884.84244forward
CNT30543418Theobroma cacaoBrassica napus45.5426.4679.9199forward
CNT30238557Theobroma cacaoBrassica oleracea44.1629.3879.27193forward
CNT30173586Theobroma cacaoTrifolium pratense54.692579.08239forward
CNT30145920Theobroma cacaoMedicago truncatula55.8432.1178.69244forward
CNT30311401Theobroma cacaoCamelina sativa53.5529.6680.77234forward
CNT3059858Theobroma cacaoArabidopsis lyrata40.7331.0682.58178forward
CNT3077678Theobroma cacaoBrassica juncea49.235.0779.53215forward
CNT30259035Theobroma cacaoBrassica rapa45.5442.9879.9199forward
CNT30611481Theobroma cacaoArabis alpina51.7227.7379.2226forward
CNT30597278Theobroma cacaoFraxinus excelsior52.445.4481.22229forward
CNT30608086Theobroma cacaoGossypium raimondii39.3643.9987.21172forward
CNT30217954Theobroma cacaoKalanchoe fedtschenkoi23.828.8982.69104forward
CNT30649241Theobroma cacaoRosa chinensis45.3117.485.35198forward
CNT30210187Theobroma cacaoHelianthus annuus56.2930.0782.11246forward
CNT30718929Theobroma cacaoMalus domestica golden35.0116.4985.62153forward
CNT30625096Theobroma cacaoDaucus carota29.9813.7287.79131forward
CNT30479074Theobroma cacaoArabidopsis halleri51.7239.1782.3226forward
CNT30621314Theobroma cacaoCajanus cajan55.8419.3583.2244forward
CNT30359331Theobroma cacaoLactuca sativa57.4429.1279.28251forward
CNT30573352Theobroma cacaoVitis vinifera54.9236.8182.92240forward
CNT30118654Theobroma cacaoCitrus clementina29.9824.3586.26131forward
CNT30725730Theobroma cacaoLupinus angustifolius38.4425.0782.74168forward

Expression of CNT3027741

Peptides detected in this lncRNA

>peptide 1 (54 aa)
DIVVERVSQVIQELYVPAGGITPVLNQGRAVSGGISPSFPSISGAMAPIAPNMA*

Sequence

>CNT3027741
AGATATTGTTGTTGAAAGGGTCAGCCAAGTGATCCAGGAGTTGTATGTTCCTGCTGGTGGGATCACACCAGTACTGAACCAAGGGAGGGCTGTTTCTGGA
GGAATCAGTCCAAGCTTCCCAAGTATTTCAGGGGCAATGGCTCCAATTGCACCCAACATGGCATAACGGCCGTTGATGACCTCACCATAGGCTAGCCATC
TGGGCTCAATGAAGCCTCCTGGACCTTCAGGGTCAGAAAGTCCCAATGGGTCGAATCCATAGTCACCTGGAAGGCTGTAGAATTGACAGGAGAAAATTTG
AAAAATTAGAACACCTGATCTAGATGTCAATGCTCGAGAAAAAGAGTAACCTATCAGTATAGCAAAATGCCAACAAAAATCTCAGGTGAAAACAGCATCA
GGGTTCTGCCGTAAATTGATTGCATCTGTTTATTTTT